View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7666_high_8 (Length: 389)
Name: NF7666_high_8
Description: NF7666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7666_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 23154909 - 23155267
Alignment:
| Q |
18 |
agaggtatcaatcaaaagcaactgatcttcctgattctaaggaggagtagtaacaagattcttgagatcaaagtaata---gtgcatgcagtaatctgca |
114 |
Q |
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| T |
23154909 |
agaggtatcaatcaaaagcagttgatcttcctgattctaaggaggggtagtaacaagattcttgagatcaaagtaataaaggtgcatgcagtaatctgca |
23155008 |
T |
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| Q |
115 |
acatcttgattaaacttcctaaatgttgctaaattttacttaactttattgattannnnnnncctcaaggttccnnnnnnncttacgaaactttctcaag |
214 |
Q |
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| T |
23155009 |
acatcttgattaaacttcctaaatgttgctaaattttacttaactttattgattatttttttcctcaaggttcctttttttcttacgaaactttctcaag |
23155108 |
T |
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| Q |
215 |
gttctttgttttggtcatattggattatttttaaacaatacacattattatttaatatttccggtaaaacatgcttgcgtttcatgtct----tatttaa |
310 |
Q |
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| T |
23155109 |
gttctttgttttggtcatattggattatttttaaacaatacacattattatttaatatttccggtaaaacatgcttgcgtttcatgtcttatatatttaa |
23155208 |
T |
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| Q |
311 |
agttttaaagagatttacgtatcaaccattgaattttgcgattaacatccaccaatttt |
369 |
Q |
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| T |
23155209 |
agttttaaagagatttacgtatcaaccattgaattttgcgattaacatccaccaatttt |
23155267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 369
Target Start/End: Original strand, 23142855 - 23142964
Alignment:
| Q |
256 |
acattattatttaatatttccggtaaaacatgcttgcgtttcatgtcttatttaaagttttaaagagatttacgtatcaaccattgaattttgcgattaa |
355 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||| |||||| |||| | |||| |
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| T |
23142855 |
acatgattatttaatatttccagtaaaacatgcttgcgttttatgtcttatttaaagtcttaa----atttacgtaacaactattgaaatttgtgtttaa |
23142950 |
T |
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| Q |
356 |
catccaccaatttt |
369 |
Q |
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||| ||| |||||| |
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| T |
23142951 |
catacacaaatttt |
23142964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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