View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7666_high_9 (Length: 347)
Name: NF7666_high_9
Description: NF7666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7666_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 44022876 - 44022553
Alignment:
| Q |
21 |
atacatagcgaaagttcaaaaagttctcacnnnnnnnnnnnnnntcttcaaatagtacgtactttactttacgtggactctcttaacataataagggaac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44022876 |
atacatagcgaaagttcaaaaagttctcacaaaaaaaataaaaatgttcaaatagtacgtactttactttacgtggactctcttaacataataagggaac |
44022777 |
T |
|
| Q |
121 |
aaattgtgcaaattattggtaagtatcacatcatcattatcgttattattaa---tactatcctatgttgatttgtattattcttgagactatcaaatga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44022776 |
aaattgtgcaaattattggtaagtatcacatcatcattatcgttattattaatactactatcctatgttgatttgtattattcttgagactatcaaatga |
44022677 |
T |
|
| Q |
218 |
agnnnnnnnnncataagctataatatcataatcaatcaacaccagtgacctgcacattatggcttaactcggttgcaaaatacgtgttgcattttggtga |
317 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44022676 |
a-aaaaaaaatcataagctataatatcataatcaatcaacaccagtgacctgcacattatggcttaactcggttgcaaaatacgtgttgcattttggtga |
44022578 |
T |
|
| Q |
318 |
tattaatgacatttttcttctcact |
342 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44022577 |
tattaatgacatttttcttctcact |
44022553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University