View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7666_low_1 (Length: 626)

Name: NF7666_low_1
Description: NF7666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7666_low_1
NF7666_low_1
[»] chr7 (2 HSPs)
chr7 (1-617)||(33110165-33110781)
chr7 (259-330)||(38846223-38846294)
[»] chr8 (4 HSPs)
chr8 (38-438)||(33221785-33222186)
chr8 (275-380)||(18551482-18551587)
chr8 (256-329)||(613273-613346)
chr8 (256-329)||(619667-619740)
[»] chr3 (1 HSPs)
chr3 (40-142)||(42778181-42778283)
[»] chr1 (2 HSPs)
chr1 (281-380)||(9802725-9802824)
chr1 (259-330)||(47706302-47706373)
[»] scaffold1416 (1 HSPs)
scaffold1416 (280-331)||(176-227)
[»] chr6 (4 HSPs)
chr6 (280-331)||(6343504-6343555)
chr6 (256-330)||(14816080-14816154)
chr6 (257-330)||(28518623-28518696)
chr6 (289-337)||(15514410-15514458)
[»] chr5 (1 HSPs)
chr5 (280-331)||(16989768-16989819)
[»] chr2 (2 HSPs)
chr2 (280-331)||(20482603-20482654)
chr2 (280-331)||(28018533-28018584)
[»] chr4 (1 HSPs)
chr4 (278-374)||(8122072-8122168)


Alignment Details
Target: chr7 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 617
Target Start/End: Original strand, 33110165 - 33110781
Alignment:
Q  1 ctcacaaacactttgtctttgctatttcacactagtctgaaacttggattttgactgatttgcctgctggtaaggtacctattagttgcagatgggtcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110165 ctcacaaacactttgtctttgctatttcacactagtctgaaacttggattttgactgatttgcctgctggtaaggtacctattagttgcagatgggtcta 33110264  T
Q  101 caaaatcaaatatcatgttaatggttcaatagaacaatacaaggctcggttggcagcagagggttacactcaacaagaaggagtgaattattttgatact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110265 caaaatcaaatatcatgttaatggttcaatagaacaatacaaggctcggttggcagcagagggttacactcaacaagaaggagtgaattattttgatact 33110364  T
Q  201 tttaatcctgttacaaaactcactaatgcgtttgttacttgctttagctgctacacataattggcatctccaaaaactggatgtcaataatgctttcctt 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110365 tttaatcctgttacaaaactcactaatgcgcttgttacttgctttagctgctacacataattggcatctccaaaaactggatgtcaataatgctttcctt 33110464  T
Q  301 catggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaactactttaaacctctttatggt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110465 catggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaactactttaaacctctttatggt 33110564  T
Q  401 ttgaaataaggcaagctgcaatggctctccaaattatcctcnnnnnnnctattggattcactcaatcccaatctgattattcattgttcactnnnnnnnn 500  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||            
T  33110565 ttgaaataaggcaagctgcaatggctctccaaattatcctctttttttctattggattcactcaatcccaatctgattattcattgttcactaaaaaaaa 33110664  T
Q  501 cctctactctttcacaactctattggtatatgttgatgatgttattctcacatgaacatccatttcagatatccactctgttaaacttggtccttacttc 600  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110665 cctctactctttcacaactctgttggtatatgttgatgatgttattctcacatgaacatccatttcagatatccactctgttaaacttggtccttacttc 33110764  T
Q  601 ttccgctcttcatctca 617  Q
    | |||||||||||||||    
T  33110765 tcccgctcttcatctca 33110781  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 38846294 - 38846223
Alignment:
Q  259 aattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatg 330  Q
    ||||||||||| ||  |||| ||||||||||||||||| || ||||| || ||| | |||||||||||||||    
T  38846294 aattggcatcttcatcaacttgatgtcaataatgcttttctgcatggggatcttcaagaagatgtgtacatg 38846223  T

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Target: chr8 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 38 - 438
Target Start/End: Original strand, 33221785 - 33222186
Alignment:
Q  38 tgaaacttggattttgactgatttgcctgctggtaaggtacctattagttgcagatgggtctacaaaatcaaatatcatgttaatggttcaatagaacaa 137  Q
    ||||||||||||||||| |||| |||||| |||||| ||||||||| |||| |||||||| |||||||||||||| |||| |||||| || |||||||||    
T  33221785 tgaaacttggattttgaatgatgtgcctgatggtaaagtacctattggttgaagatgggtttacaaaatcaaataccatgctaatggctccatagaacaa 33221884  T
Q  138 tacaaggctcggttggcagcagagggttacactcaacaagaaggagtgaattattttgatacttttaatcctgttacaaaactcacta--atgcgtttgt 235  Q
    ||||||||| | ||||   || |||| |||||||  |||||| ||||||| |||||||| ||||||| || |||  ||||||| ||||   || ||||||    
T  33221885 tacaaggcttgtttggtgtcaaagggctacactctgcaagaatgagtgaactattttgacacttttagtcatgtagcaaaacttactattgtgtgtttgt 33221984  T
Q  236 tacttgctttagctgctacacataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagct 335  Q
    | ||||| |||| ||||||||||||||||||||||||| || || ||||||| ||||| ||  ||||||||||||||||| | |||||   |||||||||    
T  33221985 tgcttgcattagatgctacacataattggcatctccaacaattgaatgtcaaaaatgcatttattcatggagaccttgataaggatgtaagcatgaagct 33222084  T
Q  336 tcatcctggtgttcattcttccaaaccaaatcaagtttgtaaactactttaaacctctttatggtttgaaataaggcaagctgcaatggctctccaaatt 435  Q
    || |||| |||||   |||| |||||| |||||||||| |||| | | | ||| ||||||| |||||||| |||| ||| |  |||||| | ||||||||    
T  33222085 tcctcctagtgtttcatctttcaaacctaatcaagtttctaaattgc-tcaaatctctttagggtttgaagtaagccaaccaccaatggttttccaaatt 33222183  T
Q  436 atc 438  Q
    |||    
T  33222184 atc 33222186  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 275 - 380
Target Start/End: Complemental strand, 18551587 - 18551482
Alignment:
Q  275 aactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttg 374  Q
    |||| |||||||||||||||||||||||||| ||  |  | ||| ||||||||||| | |||| ||| |||||| | || ||||||||||||||||||||    
T  18551587 aacttgatgtcaataatgctttccttcatggtgaattgcaagaaaatgtgtacatgcaacttcctccaggtgttaaatcatccaaaccaaatcaagtttg 18551488  T
Q  375 taaact 380  Q
    ||||||    
T  18551487 taaact 18551482  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 613273 - 613346
Alignment:
Q  256 cataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacat 329  Q
    |||||||||||| | ||  |||| ||||| |||||||| ||||||||||| || ||| | ||||||||||||||    
T  613273 cataattggcatttacatcaacttgatgtaaataatgccttccttcatggtgaacttcaggaagatgtgtacat 613346  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 329
Target Start/End: Original strand, 619667 - 619740
Alignment:
Q  256 cataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacat 329  Q
    |||||||||||| | ||  |||| ||||| |||||||| ||||||||||| || ||| | ||||||||||||||    
T  619667 cataattggcatttacatcaacttgatgtaaataatgccttccttcatggtgaacttcaggaagatgtgtacat 619740  T

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Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 42778283 - 42778181
Alignment:
Q  40 aaacttggattttgactgatttgcctgctggtaaggtacctattagttgcagatgggtctacaaaatcaaatatcatgttaatggttcaatagaacaata 139  Q
    |||||||||||||||  ||||||||| ||||||||||| |||||||||| |||| | | ||||| |||||||| ||||||||| ||||||||||||| ||    
T  42778283 aaacttggattttgagagatttgccttctggtaaggtatctattagttgtagatagatttacaagatcaaataccatgttaatagttcaatagaacatta 42778184  T
Q  140 caa 142  Q
    |||    
T  42778183 caa 42778181  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 281 - 380
Target Start/End: Complemental strand, 9802824 - 9802725
Alignment:
Q  281 atgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaact 380  Q
    |||||||||||||||| |||||||| ||| |  | ||| ||||||||||| | |||| ||| |||||| |  | |||||||||||||||||||| |||||    
T  9802824 atgtcaataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtaacttcctccaggtgttaaaacatccaaaccaaatcaagtttgcaaact 9802725  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 47706373 - 47706302
Alignment:
Q  259 aattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatg 330  Q
    ||||||||||| ||  |||| ||||||||||||||||| || ||||| || ||| | |||||||||||||||    
T  47706373 aattggcatcttcatcaacttgatgtcaataatgcttttctgcatggggatcttcaagaagatgtgtacatg 47706302  T

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Target: scaffold1416 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 227 - 176
Alignment:
Q  280 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 331  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  227 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 176  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 6343504 - 6343555
Alignment:
Q  280 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 331  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  6343504 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 6343555  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 14816080 - 14816154
Alignment:
Q  256 cataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatg 330  Q
    |||||||||||| | ||  |||| |||||||||||||| || |||||||| || ||| | |||||||||||||||    
T  14816080 cataattggcatttacatcaacttgatgtcaataatgcctttcttcatggtgaacttcaggaagatgtgtacatg 14816154  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 28518696 - 28518623
Alignment:
Q  257 ataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatg 330  Q
    ||||||||||||| ||  |||| ||||||||||||||||| || ||||  || ||| | |||||||||||||||    
T  28518696 ataattggcatcttcaccaactagatgtcaataatgcttttctgcatgaggatcttcaagaagatgtgtacatg 28518623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 15514458 - 15514410
Alignment:
Q  289 aatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttc 337  Q
    ||||||||||| |||||||||||||||||||| || || ||||| ||||    
T  15514458 aatgctttcctacatggagaccttgatgaagaagtatatatgaatcttc 15514410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 16989819 - 16989768
Alignment:
Q  280 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 331  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  16989819 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 16989768  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 20482654 - 20482603
Alignment:
Q  280 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 331  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  20482654 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 20482603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 28018533 - 28018584
Alignment:
Q  280 gatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatga 331  Q
    ||||| || |||||||||||||||||||| ||| |||||||||| |||||||    
T  28018533 gatgtaaacaatgctttccttcatggagagcttcatgaagatgtttacatga 28018584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 374
Target Start/End: Complemental strand, 8122168 - 8122072
Alignment:
Q  278 tggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttg 374  Q
    ||||||| || ||||| || ||||||||||| ||| |||||||||| |||||||   ||| ||| ||||||  | |||| |||||||| ||||||||    
T  8122168 tggatgtaaacaatgcctttcttcatggagatcttcatgaagatgtttacatgaccattcctccaggtgtttctacttcaaaaccaaaccaagtttg 8122072  T

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