View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7666_low_14 (Length: 314)
Name: NF7666_low_14
Description: NF7666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7666_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 32888312 - 32888567
Alignment:
| Q |
19 |
attcgtttgctatttttatctggttctaaaaatctaaaatagatagcatattttccagaaaagaaatagttccaaactnnnnnnnngcatatataataag |
118 |
Q |
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| T |
32888312 |
attcgtttgctatttttatctggttctaaaaatctaaaatagatagcatattttccagaaaacaaatagttccaaactaaaaaaaagcatatataataag |
32888411 |
T |
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| Q |
119 |
cataatcgaccaaaaccgtttaacttttaatcaaactgaagttttcattcttcttctctttaaacaaattatgtattttcttttgactaagcatttggta |
218 |
Q |
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| T |
32888412 |
cataatcgaccaaaaccgtttaacttttaattaaactgaagttttcattcttcttctctttaaataaattatgtattttcttttgactaagcatttggta |
32888511 |
T |
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| Q |
219 |
taacttgttacatgtgtgatgagtcagacaccaacttcaatggtaacactaaaaaa |
274 |
Q |
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| T |
32888512 |
tatgttcttacatgtgtgatgagtcagacaccaacttcaatggtaacactaaaaaa |
32888567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 32883177 - 32883411
Alignment:
| Q |
19 |
attcgtttgctatttttatctggttctaaaaatctaaaatagatagcatattttccagaaaagaaatagttccaaactnnnnnnnngcatatataataag |
118 |
Q |
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| T |
32883177 |
attcgtttgctatttttatctggttctaaaaatctaaaaaagattgtatattttccaaaaaaaaaatagttccaaact-----aaagcatatataataa- |
32883270 |
T |
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| Q |
119 |
cataatcgaccaaaaccgtttaacttttaatcaaactgaagttttcattcttcttctctttaaacaaattatgtattttcttttgactaagcatttggta |
218 |
Q |
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| T |
32883271 |
---aatcgaccaaaaccgtttaacttttaattaaacttaaggtttcattctccttctcatt----aagttaagtattttcttttgact---------tta |
32883354 |
T |
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| Q |
219 |
taacttgttacatgtgtgatgagtcagacaccaacttcaatggtaacactaaaaaatg |
276 |
Q |
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| T |
32883355 |
taagtaatt-ggtgtgtgatgagtcagacaccaacttcaatggtaacactaaaaaatg |
32883411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 151 - 271
Target Start/End: Original strand, 32878266 - 32878386
Alignment:
| Q |
151 |
aaactgaagttttcattcttcttctctttaaacaaattatgtattttcttttgact----aagcatttggtataacttgttacatgtgtgatgagtcaga |
246 |
Q |
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| T |
32878266 |
aaacttaaggtttcattctccttctctttaaa----ttaagtattttcttttgactttataagcaattggtatatgttcttacatatgtgttgagtcgga |
32878361 |
T |
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| Q |
247 |
caccaacttcaatggtaacactaaa |
271 |
Q |
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| T |
32878362 |
caccaacttcaatggtaacactaaa |
32878386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 32877361 - 32877434
Alignment:
| Q |
61 |
atagcatattttccagaaaagaaatagttccaaactnnnnnnnngcatatataataagcataatcgaccaaaacc |
135 |
Q |
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| T |
32877361 |
atagcatattttccaaaaaacaaatagttccaaactaaaaaaa-gcatatataataagcataatcgaccaaaacc |
32877434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 32877332 - 32877361
Alignment:
| Q |
19 |
attcgtttgctatttttatctggttctaaa |
48 |
Q |
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| T |
32877332 |
attcgtttgctatttttatctggttctaaa |
32877361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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