View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7666_low_16 (Length: 251)
Name: NF7666_low_16
Description: NF7666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7666_low_16 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 35098216 - 35098461
Alignment:
| Q |
9 |
tggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgtta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35098216 |
tggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgtta |
35098315 |
T |
|
| Q |
109 |
ttatgttgcttaaaaattatttgcgtccttgagagtgttggttgtaatgcttaccttttgtgtgtgatgtgggt----gtgagttatcatgtcatatgtg |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35098316 |
ttatgttgcttaaaaattattcgcgtccttcagagtgttggttgtaatgcttaccttttgtgtgtgatgtgggtgtgagtgagttatcatgtcatatgtg |
35098415 |
T |
|
| Q |
205 |
aaatgttgctgaataaataaaattattaattctccaatttttccttc |
251 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35098416 |
aaatgttgctgaataaat-aaattattaattctccaatttttccttc |
35098461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 35097927 - 35098034
Alignment:
| Q |
9 |
tggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgtta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35097927 |
tggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaacttataatgagttctgtctgtta |
35098026 |
T |
|
| Q |
109 |
ttatgttg |
116 |
Q |
| |
|
|||||||| |
|
|
| T |
35098027 |
ttatgttg |
35098034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 35072755 - 35072678
Alignment:
| Q |
9 |
tggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaac |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35072755 |
tggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggttgaac |
35072678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 36296528 - 36296449
Alignment:
| Q |
9 |
tggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaactt |
88 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| | ||||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
36296528 |
tggtgttctcactgtaactgttccaaaagaagaagttaagaaacctgatgttaagtctattgagatctctggttgaactt |
36296449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 35107105 - 35107183
Alignment:
| Q |
9 |
tggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaact |
87 |
Q |
| |
|
|||||||||| |||| ||||| || || |||||||||||||||||||| || || |||||||||||||||||| |||| |
|
|
| T |
35107105 |
tggtgttctcgctgtcactgtccctaaggaagagatcaagaagcctgaagtcaaagccattgaaatctctggttaaact |
35107183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 36935932 - 36935859
Alignment:
| Q |
9 |
tggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggtt |
82 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||| | ||||||||||| || ||| ||||||| |||||||||| |
|
|
| T |
36935932 |
tggtgttctcactgttaccgtgccacaagaagaggttaagaagcctgaagtgaagaccattgatatctctggtt |
36935859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 24014254 - 24014177
Alignment:
| Q |
9 |
tggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggttgaac |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24014254 |
tggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggttgaac |
24014177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University