View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7666_low_3 (Length: 536)
Name: NF7666_low_3
Description: NF7666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7666_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 17346847 - 17347372
Alignment:
| Q |
1 |
caaatccacaatcttttatctcttcaacggttatgttccactccaaaccactttatcacttgccagatccaactcatattagttaactactagcgagtag |
100 |
Q |
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| T |
17346847 |
caaatccacaatcttttatctcttcaacggttaagttcccctccaaaccactttatcacttgccagatccaactcatattagttaactactagcgagtag |
17346946 |
T |
|
| Q |
101 |
acgggtactaataattgaccg-ct------ttttctcgatacaaataattgacgttacaaaaatttaagctataattnnnnnnnnnntcattttgtagag |
193 |
Q |
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| T |
17346947 |
acgg-tactaaca--tgcccgtctatccgcttttctcgatacaaataattgacgttacaaaattttaagctataattaaaaaaaat-tcattttgtagag |
17347042 |
T |
|
| Q |
194 |
atatttttgcgagttaaaataaatctgtttagaatgaatgtggaagcgacccgtttacataaaactcttacttcattgataaggtactcgaatgtttgca |
293 |
Q |
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| T |
17347043 |
atatttttgcgagttaaaataaatctgtttataatgaatgtgaaagcgacccgtttacataaaactcttacttcattgataaggtactcgaatgtttgca |
17347142 |
T |
|
| Q |
294 |
ggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaagcttgttgaggtggaaggaa |
393 |
Q |
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| T |
17347143 |
ggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaagcttgttgaggtggaaggaa |
17347242 |
T |
|
| Q |
394 |
gtcacactctgcaaaacacttatgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccaaatgactactacat |
493 |
Q |
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| T |
17347243 |
gtcacactctgcaaaacacttatgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccacatgactactacat |
17347342 |
T |
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| Q |
494 |
tgttgtaacaacaaggttcacgtcacaggt |
523 |
Q |
| |
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| T |
17347343 |
tgttgtcacaacaaggttcacgtcacaggt |
17347372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 286 - 523
Target Start/End: Complemental strand, 17136681 - 17136444
Alignment:
| Q |
286 |
tgtttgcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaagcttgttgaggt |
385 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17136681 |
tgtttgcagggaagacttaccgattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggt |
17136582 |
T |
|
| Q |
386 |
ggaaggaagtcacactctgcaaaacacttatgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccaaatgac |
485 |
Q |
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| T |
17136581 |
ggaaggaagtcacactgtgcaaaacatttacgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccaccacatgac |
17136482 |
T |
|
| Q |
486 |
tactacattgttgtaacaacaaggttcacgtcacaggt |
523 |
Q |
| |
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| T |
17136481 |
tactacattgttgtcacaacaaggttcacgtcacaggt |
17136444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 291 - 479
Target Start/End: Complemental strand, 37091303 - 37091115
Alignment:
| Q |
291 |
gcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaagcttgttgaggtggaag |
390 |
Q |
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|||||||| || ||||||||||||||||||||||| || | || || || |||||||||||||| ||||| |||||||| || || ||||| ||||||| |
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| T |
37091303 |
gcaggcaatacatacagattccggatatcaaatgttggactcacaacttccatcaatttcagaattcaaggtcataagatgaaactagttgaagtggaag |
37091204 |
T |
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| Q |
391 |
gaagtcacactctgcaaaacacttatgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaaccacca |
479 |
Q |
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| T |
37091203 |
gaatccacacactacaaaacacttatgattcccttgatattcatttggggcagagttactctgtattggttactgctgatcaaccacca |
37091115 |
T |
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