View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7666_low_4 (Length: 453)
Name: NF7666_low_4
Description: NF7666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7666_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Original strand, 17345763 - 17346177
Alignment:
| Q |
20 |
gatcaccaatttaatatttgaaattcgacatttaattgatttcgtctccgacaatataaggttggattggtggttggagcgagggagttaagtgaagtga |
119 |
Q |
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| T |
17345763 |
gatcaccaatttaatatttgaaattcgacatttaattgatttcgtctccgacaatataaggttggattggtggttggagcgagggagttaagtgaagtga |
17345862 |
T |
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| Q |
120 |
taacgagattgagtgtttgatcctcaccttaaaccagaatactaacaatactagtagtatttattgtttaaacaaatcatattggtctctaaaatttatg |
219 |
Q |
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| T |
17345863 |
taacgagattgagtgtttgatcctcaccttaaaccagaatactaacaatactagta---tttattgtttaaacaaatcatattggtctctaaaatttatg |
17345959 |
T |
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| Q |
220 |
atatt---ctccatgattacttaaattgaaaatcctcgagttcctctgaaataatttcgaccaataaatggaaccatcctcaaaggaccaatacaatcga |
316 |
Q |
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| T |
17345960 |
atattattctccatgattacttaaattgaaaatcctcgagttcctctgaaataatttcgacgaataaatggaaccatcctcaaaggaccaatacaatcga |
17346059 |
T |
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| Q |
317 |
ggatttcaatttcatatttatttttaaattccgttaatttcagagacctggaacctacatgagacctacaattttaaggactaaattggtggtccgccgg |
416 |
Q |
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| T |
17346060 |
ggatttcaatttcatatttatttttaaattccgttaatttcagagacctggaacctacatgagacctataattttaaggactaaattggtggtccgccgg |
17346159 |
T |
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| Q |
417 |
tataaaagctgacgtgat |
434 |
Q |
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| T |
17346160 |
tataaaagctgacgtgat |
17346177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 91 - 340
Target Start/End: Complemental strand, 17137938 - 17137689
Alignment:
| Q |
91 |
ggttggagcgagggagttaagtg---aagtgataacgagattgagtgtttgatcctcaccttaaaccagaatactaacaatactagtagtatttattgtt |
187 |
Q |
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| T |
17137938 |
ggttggagtgagggagttaagtagttaagtgattacgagattgagtgcttgatcctcacgttaaaccaaaatactaacaatactagta---tttatagtt |
17137842 |
T |
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| Q |
188 |
taaacaaatcatattggtctctaaaatttatgatattctccatgattacttaaattgaaaatcctcgagttcctctgaaataatttcgaccaataaatgg |
287 |
Q |
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| T |
17137841 |
taaacaaatcaatttggtctctgaaatttatgatattctcaatgatcacttaaattgaaaatcctcgagtcgctctgaaacaatttcggggaataaatgg |
17137742 |
T |
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| Q |
288 |
aaccatcctcaaaggaccaatacaatcgaggatttcaatttcatatttatttt |
340 |
Q |
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| T |
17137741 |
aacaatcctcaaacgaacaaatcaatcgaggatttcattttcataattatttt |
17137689 |
T |
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