View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7667_high_2 (Length: 534)
Name: NF7667_high_2
Description: NF7667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7667_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 519
Target Start/End: Complemental strand, 43260359 - 43259831
Alignment:
| Q |
11 |
tagataatactcaataatgcagaatatagtaatagaatacacttttgtttttattcattctatttatgactgtgaaaattaaaataacggattcacatgt |
110 |
Q |
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| T |
43260359 |
tagataacactcaataatgcagaatatagtaatagaatacacttttgtttttattcattctatttatgactgtgaaaattaaaataacggattcacatgt |
43260260 |
T |
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| Q |
111 |
gcttgtgcacctctttcatgactggttgttgtgttgtcatgtaggttccatacttccatgattctttttccttcccgcacacatttccctccatctcaaa |
210 |
Q |
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| T |
43260259 |
gcttgtgcacctctttcatgactggttgttgtgttgtcatgtaggttccatacttccatgattccttttccttcccgcacacatttccctccatctcaaa |
43260160 |
T |
|
| Q |
211 |
ctaaatgccacatttatagtaagtgatgtgtatgatattaattagatgatataattggaat-nnnnnnnnnntcattgaaaactagaaacaacatttatt |
309 |
Q |
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| T |
43260159 |
ctaaatgccacatttatagtaagtgatgtgtatgatattaattagatgatataattggaataaaataaaaaatcattgaaaactagaaacaacatttatt |
43260060 |
T |
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| Q |
310 |
tttggacaaattattttatctaaagag-------------------tagcgcaagattgtatctatttaatcttgacattttgtaatgaatgaactttaa |
390 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| |||||||||| |
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| T |
43260059 |
tttggacaaattattttatctaaagagtagatacaacatttaattatagcgcaagattgtatctatttaatcttgatattttgcaatgagtgaactttaa |
43259960 |
T |
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| Q |
391 |
tcttacgatctttaagaagccattgccttcgtaaatctgtcaaattggaattgtgagttgaaacatatttattaggaggataatttatgcgatcttcttg |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43259959 |
tcttacgatctttaagaagccattgccttcgtaaatctgtcaaattggaattgtgagttgaaacatatttattaggaggataatctatgcgatcttcttg |
43259860 |
T |
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| Q |
491 |
caaacttaggtcgtagtggatgagatatt |
519 |
Q |
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| T |
43259859 |
caaacttaggtcgtagtggatgagatatt |
43259831 |
T |
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