View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7667_high_5 (Length: 330)

Name: NF7667_high_5
Description: NF7667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7667_high_5
NF7667_high_5
[»] chr1 (3 HSPs)
chr1 (70-197)||(29850440-29850567)
chr1 (250-315)||(29850624-29850690)
chr1 (138-181)||(31862047-31862090)
[»] chr4 (8 HSPs)
chr4 (90-204)||(35028551-35028665)
chr4 (252-284)||(35028462-35028494)
chr4 (135-165)||(14272296-14272326)
chr4 (137-182)||(13216895-13216940)
chr4 (137-182)||(24572243-24572288)
chr4 (137-178)||(32743052-32743093)
chr4 (138-182)||(14272048-14272092)
chr4 (138-182)||(53840080-53840124)
[»] chr6 (4 HSPs)
chr6 (82-203)||(12995903-12996024)
chr6 (82-203)||(13025048-13025169)
chr6 (79-203)||(6446238-6446360)
chr6 (138-182)||(66948-66992)
[»] chr3 (5 HSPs)
chr3 (133-204)||(31420750-31420821)
chr3 (251-296)||(31420647-31420692)
chr3 (136-182)||(49906674-49906720)
chr3 (137-182)||(39721918-39721963)
chr3 (137-182)||(43430145-43430190)
[»] chr2 (4 HSPs)
chr2 (136-204)||(36420354-36420423)
chr2 (138-182)||(16643642-16643686)
chr2 (135-168)||(28863826-28863859)
chr2 (138-182)||(10498315-10498359)
[»] chr5 (4 HSPs)
chr5 (138-182)||(41047889-41047933)
chr5 (138-182)||(22229261-22229305)
chr5 (137-179)||(11078987-11079029)
chr5 (140-182)||(30335092-30335134)
[»] chr7 (2 HSPs)
chr7 (137-182)||(5467810-5467855)
chr7 (136-182)||(44271776-44271822)
[»] chr8 (1 HSPs)
chr8 (137-182)||(72968-73013)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 29850440 - 29850567
Alignment:
Q  70 ttagtcccattactaatatgcgagtaaaaatacagacacatgtatatattnnnnnnnntagattcatgtattaatatatgaataaaaatatagacacatt 169  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||         | |||||||||||||||||||||||||||||||||||||||    
T  29850440 ttagtccccttactaatatgcgagtaaaaatacatacacatgtatatattaaaaaaaaaaaattcatgtattaatatatgaataaaaatatagacacatt 29850539  T
Q  170 tataaacataaaagatgtttgtattaat 197  Q
    ||||||||||||||||||||||||||||    
T  29850540 tataaacataaaagatgtttgtattaat 29850567  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 29850624 - 29850690
Alignment:
Q  250 tttggtgtggcacttgccacaccatgccctggccaaatccgtccctgctaat-gggtggttacaact 315  Q
    ||||||||| |||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  29850624 tttggtgtgacacttgccacaccatgccctggtcaaatccgtctctgctaatggggtggttacaact 29850690  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 31862047 - 31862090
Alignment:
Q  138 tattaatatatgaataaaaatatagacacatttataaacataaa 181  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  31862047 tattaatatatgagtaaaaatatagacacatgtataaacataaa 31862090  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 35028665 - 35028551
Alignment:
Q  90 cgagtaaaaatacagacacatgtatatattnnnnnnnntagattcatgtattaatatatgaataaaaatatagacacatttataaacataaaagatgttt 189  Q
    ||||||||||||||||||||||||||||||        || |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||    
T  35028665 cgagtaaaaatacagacacatgtatatattaaaaaatatatattcatgtattaatatatgagtaaaaatatagacacatgtataaatataaaagatgttt 35028566  T
Q  190 gtattaatatatgag 204  Q
    |||||||||||||||    
T  35028565 gtattaatatatgag 35028551  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 35028494 - 35028462
Alignment:
Q  252 tggtgtggcacttgccacaccatgccctggcca 284  Q
    |||||||||||||||||||||||||||||||||    
T  35028494 tggtgtggcacttgccacaccatgccctggcca 35028462  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 14272326 - 14272296
Alignment:
Q  135 atgtattaatatatgaataaaaatatagaca 165  Q
    |||||||||||||||||||||||||||||||    
T  14272326 atgtattaatatatgaataaaaatatagaca 14272296  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 13216895 - 13216940
Alignment:
Q  137 gtattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    |||||||||||||| ||||||||||||| | | |||||||||||||    
T  13216895 gtattaatatatgagtaaaaatatagacgcgtgtataaacataaaa 13216940  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 24572243 - 24572288
Alignment:
Q  137 gtattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    |||||||||||||| ||||||||||||| | | |||||||||||||    
T  24572243 gtattaatatatgagtaaaaatatagacgcgtgtataaacataaaa 24572288  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 32743052 - 32743093
Alignment:
Q  137 gtattaatatatgaataaaaatatagacacatttataaacat 178  Q
    ||||||||||| || ||||||||||||||||| |||||||||    
T  32743052 gtattaatatacgagtaaaaatatagacacatgtataaacat 32743093  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 14272092 - 14272048
Alignment:
Q  138 tattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    ||||||||||||| ||||||||||||||||| || |||| |||||    
T  14272092 tattaatatatgagtaaaaatatagacacatgtaaaaacctaaaa 14272048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 53840124 - 53840080
Alignment:
Q  138 tattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    ||||||||||||| ||||||||||||  ||| |||||||||||||    
T  53840124 tattaatatatgagtaaaaatatagatgcatgtataaacataaaa 53840080  T

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Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 12996024 - 12995903
Alignment:
Q  82 ctaatatgcgagtaaaaatacagacacatgtatatattnnnnnnnntagattcatgtattaatatatgaataaaaatatagacacatttataaacataaa 181  Q
    ||||||| ||| ||||||||| ||||||||||||||||        ||||||| | |||||||||||||||||||||||| |||||| |||||| |||||    
T  12996024 ctaatatacgaataaaaatacggacacatgtatatattaaaaataatagattcctatattaatatatgaataaaaatataaacacatatataaaaataaa 12995925  T
Q  182 agatgtttgtattaatatatga 203  Q
    ||||||||||||||||||||||    
T  12995924 agatgtttgtattaatatatga 12995903  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 13025169 - 13025048
Alignment:
Q  82 ctaatatgcgagtaaaaatacagacacatgtatatattnnnnnnnntagattcatgtattaatatatgaataaaaatatagacacatttataaacataaa 181  Q
    ||||||| ||||||||||||| ||||||||||||||||        ||||||| | |||||||||||||||||||||||| |||||| |||||| |||||    
T  13025169 ctaatatacgagtaaaaatacggacacatgtatatattaaaaataatagattcctatattaatatatgaataaaaatataaacacatgtataaaaataaa 13025070  T
Q  182 agatgtttgtattaatatatga 203  Q
    |||||||||||||| |||||||    
T  13025069 agatgtttgtattattatatga 13025048  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 6446238 - 6446360
Alignment:
Q  79 ttactaatatgcgagtaaaaatacagacacatgtatatattnnnnnnnntagattcatgtattaatatatgaataaaaatatagacacatttataaacat 178  Q
    ||||||||||   ||||||||||||  ||||||||||||||        ||| ||||||||||||||||||| ||||||||||| ||||| |||||||||    
T  6446238 ttactaatataatagtaaaaataca--cacatgtatatattaaaaaaaataggttcatgtattaatatatgagtaaaaatatagtcacatgtataaacat 6446335  T
Q  179 aaaagatgtttgtattaatatatga 203  Q
    |||||||||||||||| ||||||||    
T  6446336 aaaagatgtttgtattgatatatga 6446360  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 66992 - 66948
Alignment:
Q  138 tattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    ||||||||||||| |||||||||| |||||| |||||||||||||    
T  66992 tattaatatatgagtaaaaatataaacacatgtataaacataaaa 66948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 31420821 - 31420750
Alignment:
Q  133 tcatgtattaatatatgaataaaaatatagacacatttataaacataaaagatgtttgtattaatatatgag 204  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  31420821 tcatgtattaatatatgaataaaaatatagacacatatataaacataaaagatgtttgtcttaatatatgag 31420750  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 31420692 - 31420647
Alignment:
Q  251 ttggtgtggcacttgccacaccatgccctggccaaatccgtccctg 296  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||    
T  31420692 ttggtgtggcacttgccacaccatgccctgttcaaatccgttcctg 31420647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 49906720 - 49906674
Alignment:
Q  136 tgtattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    ||||||||||||||| ||||||||||||| | | |||||||||||||    
T  49906720 tgtattaatatatgagtaaaaatatagacgcgtgtataaacataaaa 49906674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 39721963 - 39721918
Alignment:
Q  137 gtattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    |||||||||||||| ||||||||| ||| ||| |||||||||||||    
T  39721963 gtattaatatatgagtaaaaatatggacgcatgtataaacataaaa 39721918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 43430145 - 43430190
Alignment:
Q  137 gtattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    ||||| ||||| || ||||||||||||||||| |||||||||||||    
T  43430145 gtattcatatacgagtaaaaatatagacacatgtataaacataaaa 43430190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 36420423 - 36420354
Alignment:
Q  136 tgtattaatatatgaataaaaa-tatagacacatttataaacataaaagatgtttgtattaatatatgag 204  Q
    ||||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  36420423 tgtattagtatatgagtaaaaaatatagacacatgtataaacataaaagatgtttgtattaatatatgag 36420354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 16643686 - 16643642
Alignment:
Q  138 tattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    ||||||||||||||||||| |||||| |||| |||||||||||||    
T  16643686 tattaatatatgaataaaagtatagatacatgtataaacataaaa 16643642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 28863826 - 28863859
Alignment:
Q  135 atgtattaatatatgaataaaaatatagacacat 168  Q
    ||||||| ||||||||||||||||||||||||||    
T  28863826 atgtattgatatatgaataaaaatatagacacat 28863859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 10498359 - 10498315
Alignment:
Q  138 tattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    ||||||||||| | ||||||||||||||||| |||||| ||||||    
T  10498359 tattaatatataagtaaaaatatagacacatatataaatataaaa 10498315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 41047933 - 41047889
Alignment:
Q  138 tattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||    
T  41047933 tattaatatatgagtaaaaatatagacacatgtataaacataaaa 41047889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 22229305 - 22229261
Alignment:
Q  138 tattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||||    
T  22229305 tattaatatatgaataaaaatatagacgcatgtataaacaaaaaa 22229261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 11079029 - 11078987
Alignment:
Q  137 gtattaatatatgaataaaaatatagacacatttataaacata 179  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||    
T  11079029 gtattaatatatgagtaaaaatatagacgcatgtataaacata 11078987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 30335134 - 30335092
Alignment:
Q  140 ttaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    |||||||||||||||| ||||||| |||| |||||||||||||    
T  30335134 ttaatatatgaataaatatatagatacatgtataaacataaaa 30335092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 5467810 - 5467855
Alignment:
Q  137 gtattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    |||||||||||||| |||| || |||||||||||||||||||||||    
T  5467810 gtattaatatatgagtaaatatgtagacacatttataaacataaaa 5467855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 44271822 - 44271776
Alignment:
Q  136 tgtattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    |||||||||| |||| |||||||||| |||||| |||||||||||||    
T  44271822 tgtattaatagatgagtaaaaatatatacacatatataaacataaaa 44271776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 72968 - 73013
Alignment:
Q  137 gtattaatatatgaataaaaatatagacacatttataaacataaaa 182  Q
    |||||||||||||| ||||||||||||| | | |||||||||||||    
T  72968 gtattaatatatgagtaaaaatatagacgcgtgtataaacataaaa 73013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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