View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7667_low_3 (Length: 457)
Name: NF7667_low_3
Description: NF7667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7667_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 241 - 441
Target Start/End: Complemental strand, 21707499 - 21707299
Alignment:
| Q |
241 |
ttttatgtggattagtgggatgtgttaggagaaacatcaaatcaaaacatgctaaaagggtgaaagtgtgtgttagtgttaattatgtagtgagtgaatg |
340 |
Q |
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| T |
21707499 |
ttttatgtggattagtgggatgtgttaggagaaacatcaaatcaaaacatgctaaaagggtgaaagtgtgtgttagtgttaattatgtagtgagtgaatg |
21707400 |
T |
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| Q |
341 |
aatgtttgatggcaacgatagctagctacagcttcatacgtgtcttttcatgctagacacactcttttcatgttggtgtcatttctctatagagttacaa |
440 |
Q |
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| T |
21707399 |
aatgtttgatggcaacgatagctagctacagcttcatacgtgtcttttcatgctagacacactcttttcatgttggtgtcatttctctatagagttacaa |
21707300 |
T |
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| Q |
441 |
t |
441 |
Q |
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| T |
21707299 |
t |
21707299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 21708154 - 21707962
Alignment:
| Q |
1 |
ttggtagtacgtgttaatgttccatctcatttttacgatttaaacatactagtttgatttaaacaacaaaaaataaatatgtagttcatattgaatcgat |
100 |
Q |
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| T |
21708154 |
ttggtagtacgtgttaatgttccatctcatttttacgatttaaacatactagtttgatttaaacaacaaaaaataaatatgtagctcatattgaaccgat |
21708055 |
T |
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| Q |
101 |
atcaattaaatcatcctgttaaccctaaatgtgagaaacggcgtgaattttatctacgaacaaggtgagttatttggtggacctacgaaacta |
193 |
Q |
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| T |
21708054 |
atcaattaaatcaccgtgttaaccctaaatgtgagaaagggcgtgaattttatctatgaacaaggtgagttatttggtggacctacgaaacta |
21707962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 27032631 - 27032595
Alignment:
| Q |
70 |
aaaataaatatgtagttcatattgaatcgatatcaat |
106 |
Q |
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| T |
27032631 |
aaaataaatatgtaattcatattgaatcgatatcaat |
27032595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 29726197 - 29726255
Alignment:
| Q |
51 |
agtttgatttaaacaacaaaaaataaatatgtagttcatattgaatcgatatcaattaa |
109 |
Q |
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| T |
29726197 |
agtttgattaaaacaacagaaaataaatatgtagtttgtattgaaccgacatcaattaa |
29726255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 16952547 - 16952601
Alignment:
| Q |
52 |
gtttgatttaaacaacaaaaaataaatatgtagttcatattgaatcgatatcaat |
106 |
Q |
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| T |
16952547 |
gtttgattaaaacaacggaaaataaatatgtagctcctattgaaccgatatcaat |
16952601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 40717023 - 40717069
Alignment:
| Q |
46 |
atactagtttgatttaaacaacaaaaaataaatatgtagttcatatt |
92 |
Q |
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| T |
40717023 |
atactagtttgataaaaacaacaaaaactaaatatgtagttcgtatt |
40717069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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