View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7667_low_4 (Length: 457)

Name: NF7667_low_4
Description: NF7667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7667_low_4
NF7667_low_4
[»] chr6 (9 HSPs)
chr6 (27-189)||(6825475-6825639)
chr6 (25-192)||(8655791-8655958)
chr6 (18-192)||(24249723-24249894)
chr6 (27-156)||(6823035-6823166)
chr6 (25-156)||(30689634-30689765)
chr6 (28-156)||(4555681-4555810)
chr6 (135-192)||(787416-787473)
chr6 (76-149)||(1136235-1136309)
chr6 (317-384)||(8655576-8655643)
[»] chr1 (8 HSPs)
chr1 (25-192)||(18705672-18705839)
chr1 (1-190)||(9908147-9908336)
chr1 (132-192)||(20226784-20226844)
chr1 (1-132)||(9905813-9905945)
chr1 (132-192)||(29849953-29850011)
chr1 (118-156)||(2427331-2427369)
chr1 (27-58)||(29850671-29850702)
chr1 (118-168)||(26231106-26231155)
[»] chr3 (20 HSPs)
chr3 (28-156)||(782838-782967)
chr3 (28-168)||(19954439-19954580)
chr3 (1-192)||(52737793-52737982)
chr3 (76-156)||(10018777-10018857)
chr3 (13-156)||(10514351-10514494)
chr3 (76-156)||(10123317-10123397)
chr3 (76-156)||(10256091-10256171)
chr3 (32-156)||(10661756-10661880)
chr3 (13-156)||(10511027-10511169)
chr3 (76-156)||(10179974-10180054)
chr3 (18-158)||(27825691-27825831)
chr3 (21-156)||(40131939-40132075)
chr3 (13-63)||(35240272-35240322)
chr3 (22-156)||(10613346-10613480)
chr3 (27-62)||(4607445-4607480)
chr3 (134-189)||(20868825-20868880)
chr3 (76-157)||(548415-548497)
chr3 (119-156)||(17743104-17743141)
chr3 (119-156)||(19044424-19044461)
chr3 (152-192)||(4602399-4602439)
[»] chr4 (7 HSPs)
chr4 (25-156)||(2547027-2547158)
chr4 (27-156)||(35783731-35783859)
chr4 (27-156)||(5444730-5444859)
chr4 (27-192)||(5440835-5441000)
chr4 (1-54)||(21214902-21214954)
chr4 (51-150)||(7785283-7785383)
chr4 (132-185)||(55851963-55852016)
[»] chr8 (10 HSPs)
chr8 (25-189)||(7277716-7277880)
chr8 (25-169)||(13856677-13856822)
chr8 (25-157)||(7275143-7275275)
chr8 (76-149)||(3567495-3567568)
chr8 (113-192)||(4676256-4676334)
chr8 (118-189)||(26174366-26174437)
chr8 (27-156)||(5690766-5690896)
chr8 (135-189)||(35416056-35416110)
chr8 (127-157)||(12464815-12464845)
chr8 (13-62)||(29908117-29908166)
[»] scaffold0001 (2 HSPs)
scaffold0001 (27-189)||(146687-146851)
scaffold0001 (27-156)||(144661-144792)
[»] chr7 (9 HSPs)
chr7 (25-192)||(41830207-41830374)
chr7 (25-157)||(41832613-41832745)
chr7 (44-156)||(8083389-8083500)
chr7 (4-156)||(35130531-35130683)
chr7 (41-156)||(25432090-25432205)
chr7 (143-192)||(34510821-34510870)
chr7 (76-130)||(23613779-23613833)
chr7 (28-116)||(23613676-23613765)
chr7 (118-192)||(36647451-36647525)
[»] chr5 (14 HSPs)
chr5 (65-175)||(26873142-26873252)
chr5 (25-156)||(21256627-21256758)
chr5 (25-189)||(21254155-21254319)
chr5 (27-192)||(41951695-41951861)
chr5 (27-155)||(4730612-4730741)
chr5 (25-125)||(31339169-31339270)
chr5 (1-156)||(27405306-27405460)
chr5 (117-192)||(35309111-35309186)
chr5 (27-156)||(41949333-41949463)
chr5 (27-85)||(15424591-15424649)
chr5 (118-156)||(43233925-43233963)
chr5 (118-186)||(30518655-30518723)
chr5 (118-186)||(30558995-30559063)
chr5 (27-63)||(41326293-41326329)
[»] chr2 (7 HSPs)
chr2 (41-157)||(31269462-31269577)
chr2 (25-192)||(24038270-24038437)
chr2 (44-156)||(31180245-31180355)
chr2 (25-156)||(24039465-24039596)
chr2 (29-156)||(36402684-36402811)
chr2 (13-65)||(45391919-45391971)
chr2 (13-62)||(27750845-27750894)
[»] scaffold0525 (1 HSPs)
scaffold0525 (25-156)||(2028-2159)
[»] scaffold0023 (1 HSPs)
scaffold0023 (25-156)||(111544-111675)
[»] scaffold0862 (1 HSPs)
scaffold0862 (41-157)||(246-361)
[»] scaffold0655 (1 HSPs)
scaffold0655 (25-155)||(651-782)
[»] scaffold0959 (1 HSPs)
scaffold0959 (101-156)||(408-463)
[»] scaffold0251 (1 HSPs)
scaffold0251 (25-122)||(4622-4719)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 27 - 189
Target Start/End: Complemental strand, 6825639 - 6825475
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtggg-tcactttt-ctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctct 124  Q
    ||||||||||||| ||||||  |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6825639 agtagtatatatacttgtaataaccccattagtgggataactttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttatct 6825540  T
Q  125 ccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaa 189  Q
    |||||||||||||||||||||||||||||||||||||| |||||     ||||||||||||||||    
T  6825539 ccttccttccatggatgccatgtttcctaacatggtattagagcatgattggtatccaccttgaa 6825475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 8655958 - 8655791
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  |||||||||||||||||| |||  ||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||||    
T  8655958 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattccatttccatcaatagaaagagtttcttagttttctc 8655860  T
Q  124 tccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    |||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  8655859 tccttccttctatggatgccatgtttcctaacatggtatcagagcttatctggtacccaccttgaagga 8655791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 24249723 - 24249894
Alignment:
Q  18 tagtcctagagtagtatatatagttgtaaccaccccattagtgggtcacttttc--tcattttgtaatattccatttctatcaatacaaagagtttgtta 115  Q
    |||||||| ||||||||||||||||||||| |||    || ||||  |||||||  |||||| ||||||||||||||| || ||||||||||||||||||    
T  24249723 tagtcctatagtagtatatatagttgtaactacc----taatggggtacttttcactcattt-gtaatattccatttccattaatacaaagagtttgtta 24249817  T
Q  116 gatttctctccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    | |||||||| ||| || ||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  24249818 gttttctctcattctttacattgatgccatgtttcctaacatggtatcagagctaatctgatatccacctttaagga 24249894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 6823166 - 6823035
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtggg-tcactttt-ctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctct 124  Q
    ||||||||||||| ||||||  |||| ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6823166 agtagtatatatacttgtaataaccctattagtgggataactttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttatct 6823067  T
Q  125 ccttccttccatggatgccatgtttcctaaca 156  Q
    ||||||||||||| ||| ||||||| ||||||    
T  6823066 ccttccttccatgaatgtcatgttttctaaca 6823035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 30689765 - 30689634
Alignment:
Q  25 agagtagtatatatagtt-gtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| ||| || |||||||||||||||| |||| |||||||||||||||||||||| || ||  ||||||| ||||||||| |||| ||||||    
T  30689765 agagtagtataaataatttgtaaccaccccattagagggt-acttttctcattttgtaatatttcactttcatcaatagaaagagtttcttagttttctc 30689667  T
Q  124 tccttccttccatggatgccatgtttcctaaca 156  Q
    || |||||| |||||||||||||||||||||||    
T  30689666 tcattcctttcatggatgccatgtttcctaaca 30689634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 4555681 - 4555810
Alignment:
Q  28 gtagtatatatagttgtaaccaccccattagtgggtcacttttc--tcattttgtaatattccatttctatcaatacaaagagtttgttagatttctctc 125  Q
    |||||||||||||||||||||||| ||| ||||||  |||||||  |||||  |||||||| |||||||||||||||||||||||||||||||||  |||    
T  4555681 gtagtatatatagttgtaaccacctcataagtgggatacttttcactcatta-gtaatatttcatttctatcaatacaaagagtttgttagattttgctc 4555779  T
Q  126 cttccttccatggatgccatgtttcctaaca 156  Q
    ||||  || ||||||||||||||||||||||    
T  4555780 cttcgatctatggatgccatgtttcctaaca 4555810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 787416 - 787473
Alignment:
Q  135 atggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  787416 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaagga 787473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 1136309 - 1136235
Alignment:
Q  76 tttgtaatattccatttctatcaatacaaagag-tttgttagatttctctccttccttccatggatgccatgttt 149  Q
    |||||||||||| ||||| ||||||| |||||| |||| || ||||||||| ||||||||||||||| |||||||    
T  1136309 tttgtaatattcaatttccatcaatataaagagatttgctatatttctctcattccttccatggatgtcatgttt 1136235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 384
Target Start/End: Complemental strand, 8655643 - 8655576
Alignment:
Q  317 tcttccttcctttttcgaattcggtttggatttctcgatcaaaatccaattcctgattcaatttcatc 384  Q
    |||| ||||| ||| |||||||| ||| ||||||| |||| |||| ||||||||||||||||||||||    
T  8655643 tctttcttccatttccgaattcgattttgatttcttgatcgaaattcaattcctgattcaatttcatc 8655576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 18705839 - 18705672
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  |||||||||||||||||| |||  ||||||||||||||||||||||| ||||  ||||||| ||||||||| |||| ||||||    
T  18705839 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattctattttcatcaatagaaagagtttcttagttttctc 18705741  T
Q  124 tccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    ||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  18705740 tccttcctttcatggatgccatgttttctaacatggtatcagagctaatctggtatccaccttgaagga 18705672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 9908336 - 9908147
Alignment:
Q  1 tagcttcaagtaagtactagtcctagagtagtatatatagttgtaaccaccccattagtgggtcactttt-ctcattttgtaatattccatttct-atca 98  Q
    ||||||||||||   | |||||||| ||||||||||||||||||| ||||||||||||||||||| |||  ||||||| |||||||||  ||| | ||||    
T  9908336 tagcttcaagtagtaaatagtcctatagtagtatatatagttgtagccaccccattagtgggtcaatttcactcattt-gtaatattcactttatcatca 9908238  T
Q  99 atacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaag 190  Q
    ||||||||| | | | || |||||||| ||||||   |||||  |||||||||||||||||||||||||| |||||||||||||||||||||    
T  9908237 atacaaagattatttgagttttctctcattccttgt-tggatatcatgtttcctaacatggtatcagagctaatctggtatccaccttgaag 9908147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 20226844 - 20226784
Alignment:
Q  132 tccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    |||||| ||||| |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  20226844 tccatgaatgccgtgtttcctaacatggtatcagagctaatctggtatcctccttgaagga 20226784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 9905945 - 9905813
Alignment:
Q  1 tagcttcaagtaagtactagtcctagagtagtatatatagttgtaaccaccccattagtgggtcacttt-tctcattttgtaatattccatttct-atca 98  Q
    ||||||||||||   | |||||||| ||||||||||||||||||| ||||||||||||||||||| |||  |||| ||||||||||||  ||| | ||||    
T  9905945 tagcttcaagtagtaaatagtcctatagtagtatatatagttgtagccaccccattagtgggtcaatttcactca-tttgtaatattcactttatcatca 9905847  T
Q  99 atacaaagagtttgttagatttctctccttcctt 132  Q
    ||||||||| | | | || |||||||| ||||||    
T  9905846 atacaaagattatttgagttttctctcattcctt 9905813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 29850011 - 29849953
Alignment:
Q  132 tccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    ||||||||||||||||||| ||||||||||||||||| ||  |||||||||||||||||||    
T  29850011 tccatggatgccatgtttcataacatggtatcagagcaaa--tggtatccaccttgaagga 29849953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 2427331 - 2427369
Alignment:
Q  118 tttctctccttccttccatggatgccatgtttcctaaca 156  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  2427331 tttctctcattccttccatggatgccatgtttcctaaca 2427369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 58
Target Start/End: Complemental strand, 29850702 - 29850671
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattag 58  Q
    ||||||||||||||||||||||||||||||||    
T  29850702 agtagtatatatagttgtaaccaccccattag 29850671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 26231155 - 26231106
Alignment:
Q  118 tttctctccttccttccatggatgccatgtttcctaacatggtatcagagc 168  Q
    |||||||||||| | |||||||||||||||||| |||||| ||||||||||    
T  26231155 tttctctccttcat-ccatggatgccatgtttcataacatagtatcagagc 26231106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 782967 - 782838
Alignment:
Q  28 gtagtatatatagttgtaaccaccccattagtgggtcactttt--ctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctctc 125  Q
    |||||||||||||||||||||||||||| |||||| |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  782967 gtagtatatatagttgtaaccaccccataagtgggacactttttactcattt-gtaatattccatttctatcaatacaaagagtttgttagatttctctc 782869  T
Q  126 cttccttccatggatgccatgtttcctaaca 156  Q
    |||||||||||||||| ||||||||||||||    
T  782868 cttccttccatggatgtcatgtttcctaaca 782838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 19954580 - 19954439
Alignment:
Q  28 gtagtatatatagtt-gtaaccaccccattagtgggtcactttt-ctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctctc 125  Q
    |||||||| |||||| ||||| ||| ||||||||||| |||||  ||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||    
T  19954580 gtagtataaatagtttgtaacaacctcattagtgggtaactttcactcattt-gtattattccatttccatcaatacaaagagattgttagatttctctc 19954482  T
Q  126 cttccttccatggatgccatgtttcctaacatggtatcagagc 168  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  19954481 cttccttccatggatgtcatgtttcataacatggtatcagagc 19954439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 52737982 - 52737793
Alignment:
Q  1 tagcttcaagtaagtactagtcctagagtagtatatatagttgtaaccaccccattagtgggtcacttttctcattttgtaatat--tccatttctatca 98  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |  |  |||||||||||||||    ||||  |||||    
T  52737982 tagcttcaagta-gtattagtcctagagtagtatatatagttgtaaccaccccattagtgggttaactcactcattttgtaatatcactcattaatatca 52737884  T
Q  99 atacaaagagtttgttag-atttctctccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    |||||   |||||  |||  ||||||||||| | ||| | |||  |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  52737883 ataca---agtttcatagcttttctctcctt-catccttagatatcatgtttcctaacatggtatcagagcaaatctggtatccaccttgaagga 52737793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 10018857 - 10018777
Alignment:
Q  76 tttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 156  Q
    ||||||||||| |||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  10018857 tttgtaatatttcatttccatcaatacaaagagtttgttagttttctctccttctttccatggatgccatgtttcctaaca 10018777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 10514494 - 10514351
Alignment:
Q  13 agtactagtcctagagtagtatatatagttgtaaccaccccattagtgggtcactttt-ctcattttgtaatattccatttctatcaatacaaagagttt 111  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||||| ||  |||||  ||||| | |||||||||||||| |   ||||||||||||||    
T  10514494 agtattagttctatagtagtatatatagttgtaaccaccccattagtaggatactttcactcatct-gtaatattccatttttcataatacaaagagttt 10514396  T
Q  112 gttagatttctctccttccttccatggatgccatgtttcctaaca 156  Q
     |||| |||||||||||| |||||||||||||||| |||||||||    
T  10514395 attagttttctctccttctttccatggatgccatgattcctaaca 10514351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 10123397 - 10123317
Alignment:
Q  76 tttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 156  Q
    ||||||||||| |||||| |||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||    
T  10123397 tttgtaatatttcatttccatcaatacaaagagtttgttagttttctctccttcttttcatggatgccatgtttcctaaca 10123317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 10256171 - 10256091
Alignment:
Q  76 tttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 156  Q
    ||||||||||| |||||| ||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  10256171 tttgtaatatttcatttccatcaatacaaaaagtttgttagttttctctccttctttccatggatgccatgtttcctaaca 10256091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 10661880 - 10661756
Alignment:
Q  32 tatatatagttgtaaccaccccattagtgggtcactttt-ctcattttgtaatattccattt-ctatcaatacaaagagtttgttagatttctctccttc 129  Q
    |||||||||||||||||||||||||||||||  |||||  ||||||| |||||||||||||| | || | ||||||||||||||||| |||||||| |||    
T  10661880 tatatatagttgtaaccaccccattagtgggatactttcactcattt-gtaatattccattttccat-actacaaagagtttgttagttttctctcattc 10661783  T
Q  130 cttccatggatgccatgtttcctaaca 156  Q
     ||||||||||| ||||||||||||||    
T  10661782 tttccatggatgtcatgtttcctaaca 10661756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 10511169 - 10511027
Alignment:
Q  13 agtactagtcctagagtagtatatatagttgtaaccaccccattagtgggtcacttt-tctcattttgtaatattcca-tttctatcaatacaaagagtt 110  Q
    |||| |||| ||| |||| |||||||||||||||||||||||||||||||  |||||  |||| |||||||||||||| |||| || |||||||||||||    
T  10511169 agtattagttctatagtaatatatatagttgtaaccaccccattagtgggatactttccctca-tttgtaatattccattttccat-aatacaaagagtt 10511072  T
Q  111 tgttagatttctctccttccttccatggatgccatgtttcctaaca 156  Q
    |||||| |||||||| ||| |||||| |||| ||||||||||||||    
T  10511071 tgttagttttctctcattctttccatagatg-catgtttcctaaca 10511027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 10180054 - 10179974
Alignment:
Q  76 tttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 156  Q
    ||||||||||| |||||| |||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||    
T  10180054 tttgtaatatttcatttccatcaatacaaagagtttgttagttttctctccttcttttcatggatgtcatgtttcctaaca 10179974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 27825831 - 27825691
Alignment:
Q  18 tagtcctagagtagtatatatagttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttct-atcaatacaaagagtttgttag 116  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||| ||  |||| ||||||||||||  ||| | ||||||||||||| | | | ||    
T  27825831 tagtcctatagtagtatatatagttgtagccaccccattagtgggtcaattcactca-tttgtaatattcactttatcatcaatacaaagattatttgag 27825733  T
Q  117 atttctctccttccttccatggatgccatgtttcctaacatg 158  Q
     |||||||| |||||||  |||||  ||||||||||||||||    
T  27825732 ttttctctcattccttcattggatatcatgtttcctaacatg 27825691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 40131939 - 40132075
Alignment:
Q  21 tcctagagtagtatatatagttgtaaccaccccattagtgggtcacttt-tctcattttgtaatattccatttctatcaatac-aaagagtttgttagat 118  Q
    ||||| |||||||||||||||||||| ||||| |||||||||  |||||  |||| |||||||||||| |||| ||||||||| ||| | |||| |  ||    
T  40131939 tcctatagtagtatatatagttgtaatcaccctattagtgggatactttcactca-tttgtaatattcaatttttatcaatacaaaaaactttgatctat 40132037  T
Q  119 ttctctccttccttccatggatgccatgtttcctaaca 156  Q
    ||||||| |||||||||| |||||||| |||| |||||    
T  40132038 ttctctcattccttccatagatgccatatttcataaca 40132075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 35240272 - 35240322
Alignment:
Q  13 agtactagtcctagagtagtatatatagttgtaaccaccccattagtgggt 63  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  35240272 agtattagttctagagtagtatatatagttgtaaccaccccattagtgggt 35240322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 156
Target Start/End: Complemental strand, 10613480 - 10613346
Alignment:
Q  22 cctagagtagtatatatagttgtaaccaccccattagtgggtcacttt-tctcattttgtaatattccatttctatcaatacaaagagtttgttagattt 120  Q
    |||| |||||||||||||||||||| ||||| |||| |||   |||||  |||| |||||||||||||||||     ||||||||||||||||||| |||    
T  10613480 cctatagtagtatatatagttgtaatcacccgattattggaatactttcactca-tttgtaatattccattttgcataatacaaagagtttgttagtttt 10613382  T
Q  121 ctctccttccttccatggatgccatgtttcctaaca 156  Q
    ||||| ||| ||| ||||||| |||| |||| ||||    
T  10613381 ctctcattctttctatggatgtcatgattcccaaca 10613346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 4607445 - 4607480
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtggg 62  Q
    ||||||||||||||||||||| ||||||||||||||    
T  4607445 agtagtatatatagttgtaacaaccccattagtggg 4607480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 20868825 - 20868880
Alignment:
Q  134 catggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaa 189  Q
    |||||||||||||||||| ||||||||||||||||     ||||||||||||||||    
T  20868825 catggatgccatgtttcccaacatggtatcagagcatgattggtatccaccttgaa 20868880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 548415 - 548497
Alignment:
Q  76 tttgtaatattccatttctatcaatacaaagag-tttgttagatttctctccttccttccatggatgccatgtttcctaacat 157  Q
    ||||||||||||  |||| |||||||| ||||  |||| |  ||||||||| |||||||||||||||||| |||| |||||||    
T  548415 tttgtaatattcattttccatcaatactaagaactttgatctatttctctcattccttccatggatgccaagttttctaacat 548497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 17743104 - 17743141
Alignment:
Q  119 ttctctccttccttccatggatgccatgtttcctaaca 156  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  17743104 ttctctcattcctttcatggatgccatgtttcctaaca 17743141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 19044424 - 19044461
Alignment:
Q  119 ttctctccttccttccatggatgccatgtttcctaaca 156  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  19044424 ttctctcattcctttcatggatgccatgtttcctaaca 19044461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 4602399 - 4602439
Alignment:
Q  152 taacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    ||||||||||||||||| || || |||||||||||||||||    
T  4602399 taacatggtatcagagctaacctagtatccaccttgaagga 4602439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 2547027 - 2547158
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  |||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547027 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 2547125  T
Q  124 tccttccttccatggatgccatgtttcctaaca 156  Q
    |||||||||||||||||| ||||||||||||||    
T  2547126 tccttccttccatggatgtcatgtttcctaaca 2547158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 35783731 - 35783859
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctctcc 126  Q
    ||||||||||||||||||||||||| ||||||  |||  || || |||||| ||||||||||||||| |||||||||||||||||||||| |||  ||||    
T  35783731 agtagtatatatagttgtaaccacctcattagaaggtgtctcttatcattt-gtaatattccatttcaatcaatacaaagagtttgttagtttttcctcc 35783829  T
Q  127 ttccttccatggatgccatgtttcctaaca 156  Q
    ||| |||||||||||||||||||| |||||    
T  35783830 ttctttccatggatgccatgtttcttaaca 35783859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 5444730 - 5444859
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttag-atttctctc 125  Q
    ||||||||||||||||||||||||| ||||||  |||  || || |||||| ||||||||||||||| ||||||||||||||||||||||  |||| |||    
T  5444730 agtagtatatatagttgtaaccacctcattagaaggtatctcttatcattt-gtaatattccatttcaatcaatacaaagagtttgttagtttttccctc 5444828  T
Q  126 cttccttccatggatgccatgtttcctaaca 156  Q
    |||| |||||| |||||||||||||||||||    
T  5444829 cttctttccatagatgccatgtttcctaaca 5444859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 5440835 - 5441000
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtgggtcacttttctcat--tttgtaatattccatttctatcaatacaaagagtttgttagatttct-c 123  Q
    ||||||||||||||||||||||||| | ||||  |||    ||||| ||  ||| ||||||| |||||| |||||||||||||||||||||| ||| | |    
T  5440835 agtagtatatatagttgtaaccacctcgttagaaggta---tttcttatgatttctaatatttcatttcaatcaatacaaagagtttgttagtttttttc 5440931  T
Q  124 tccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    |||||| ||  || ||||||||||||||||||||||||||||||| || ||||||||||  ||||||||    
T  5440932 tccttctttttatagatgccatgtttcctaacatggtatcagagctaacctggtatccattttgaagga 5441000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21214902 - 21214954
Alignment:
Q  1 tagcttcaagtaagtactagtcctagagtagtatatatagttgtaaccacccca 54  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  21214902 tagcttcaagta-gtactagtcctatagtagtatatatagttgtaaccacccca 21214954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 7785383 - 7785283
Alignment:
Q  51 cccattagtgggtcactttt-ctcattttgtaatattccatttctatcaatacaaagag-tttgttagatttctctccttccttccatggatgccatgtt 148  Q
    ||||||||||||| |||||  ||||||| ||||||||| ||||| |||||||||||||| ||||  | |||||| || |||||||||||||||  |||||    
T  7785383 cccattagtgggtaactttcactcattt-gtaatattcaatttccatcaatacaaagagctttgacatatttctttcattccttccatggatgtaatgtt 7785285  T
Q  149 tc 150  Q
    ||    
T  7785284 tc 7785283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 55852016 - 55851963
Alignment:
Q  132 tccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccacct 185  Q
    |||||||||||||||||||||||||| |||||||||| |   ||||||||||||    
T  55852016 tccatggatgccatgtttcctaacatcgtatcagagcaagattggtatccacct 55851963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 7277880 - 7277716
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  |||||||||||||||||| |||| ||||||||||||||||||||||||||||  ||||||| ||||||||| |||| ||||||    
T  7277880 agagtagtataaataacttgtaaccaccccattagagggt-acttttctcattttgtaatattccattttcatcaatagaaagagtttcttagttttctc 7277782  T
Q  124 tccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaa 189  Q
    |||||| |||||||||| |||||||||||||||||||||||||||     ||||||||||||||||    
T  7277781 tccttctttccatggataccatgtttcctaacatggtatcagagcatgattggtatccaccttgaa 7277716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 13856677 - 13856822
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcactttt-ctcattttgtaatattccatttctatcaatacaaagagtttgttagatttct 122  Q
    ||||||||||| |||  |||||||||||||||||| |||| |||||  ||||||| ||| |||||||||||||||||||||||| ||| ||||| |||||    
T  13856677 agagtagtataaataacttgtaaccaccccattagagggttactttcactcattt-gtagtattccatttctatcaatacaaagtgttcgttagttttct 13856775  T
Q  123 ctccttccttccatggatgccatgtttcctaacatggtatcagagcg 169  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  13856776 ctccttctttccatggatgtcatgtttcataacatggtatcagagcg 13856822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 7275275 - 7275143
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  |||||||||||||||||| |||| ||||||||||||||||||||||||||||  ||||||| ||||||||| |||| ||||||    
T  7275275 agagtagtataaataacttgtaaccaccccattagagggt-acttttctcattttgtaatattccattttcatcaatagaaagagtttcttagttttctc 7275177  T
Q  124 tccttccttccatggatgccatgtttcctaacat 157  Q
    |||||| || ||||||| ||||||||||||||||    
T  7275176 tccttcttttcatggataccatgtttcctaacat 7275143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 3567568 - 3567495
Alignment:
Q  76 tttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgttt 149  Q
    |||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||| ||||| |||||||    
T  3567568 tttgtaatattccattttcatcaatacaaagagtttgttagatttctttccttccttccacggatgtcatgttt 3567495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 4676256 - 4676334
Alignment:
Q  113 ttagatttctctccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    |||| |||||||| |||||||  |||||  |||||||||||| ||||||||||||| || ||||||||||||||||||||    
T  4676256 ttagttttctctcattccttcg-tggatatcatgtttcctaatatggtatcagagctaacctggtatccaccttgaagga 4676334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 26174366 - 26174437
Alignment:
Q  118 tttctctccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaa 189  Q
    |||||||| |||||||| |||||  ||||||| |||||||||||||||| | ||| ||||||||||||||||    
T  26174366 tttctctcattccttccttggatatcatgtttactaacatggtatcagaacaaatatggtatccaccttgaa 26174437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 5690766 - 5690896
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtgggtcacttttctcattttgtaatattccattt--ctatcaatacaaagagtttgttagat-ttctc 123  Q
    ||||||||||||||||||||| ||||||| ||||||  |  || ||||||| |||||||| |||||  ||||||||||||  | |||  ||| | |||||    
T  5690766 agtagtatatatagttgtaacaaccccatgagtgggataacttcctcattt-gtaatattacattttactatcaatacaacaa-tttcatagctattctc 5690863  T
Q  124 tccttccttccatggatgccatgtttcctaaca 156  Q
    || |||||||||||||||||||||||| |||||    
T  5690864 tcattccttccatggatgccatgtttcataaca 5690896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 35416110 - 35416056
Alignment:
Q  135 atggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaa 189  Q
    |||||||||||||||| |||||||||||||||||  |  ||||||||||||||||    
T  35416110 atggatgccatgtttcttaacatggtatcagagcataattggtatccaccttgaa 35416056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 157
Target Start/End: Original strand, 12464815 - 12464845
Alignment:
Q  127 ttccttccatggatgccatgtttcctaacat 157  Q
    |||||||||||||||||||||||||||||||    
T  12464815 ttccttccatggatgccatgtttcctaacat 12464845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 29908166 - 29908117
Alignment:
Q  13 agtactagtcctagagtagtatatatagttgtaaccaccccattagtggg 62  Q
    |||| |||||||| |||||| |||||||||||||||||  ||||||||||    
T  29908166 agtattagtcctatagtagtgtatatagttgtaaccacttcattagtggg 29908117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 27 - 189
Target Start/End: Complemental strand, 146851 - 146687
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtggg-tcactttt-ctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctct 124  Q
    ||||||||||||| ||||||  ||| |||||||||| | |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  146851 agtagtatatatatttgtaataacctcattagtgggataactttttctcattttgtaatattccatttctatcaatataaagagtttgttagatttatct 146752  T
Q  125 ccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaa 189  Q
    ||||||||| || ||||||||||||||||||||||||||| |||     ||||||||||||||||    
T  146751 ccttccttctatagatgccatgtttcctaacatggtatcaaagcatgattggtatccaccttgaa 146687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 144792 - 144661
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtggg-tcactttt-ctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctct 124  Q
    ||||||||||||| ||||||  |||||||||||||| | |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  144792 agtagtatatatacttgtaataaccccattagtgggataactttttctcattttgtaatattccatttctatcaatataaagagtttgttagatttatct 144693  T
Q  125 ccttccttccatggatgccatgtttcctaaca 156  Q
    |||||||||||| |||||||||||||||||||    
T  144692 ccttccttccatagatgccatgtttcctaaca 144661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 41830207 - 41830374
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  |||||||||||||||||| |||  ||||||||||||||||||||||| ||||  ||||||| ||||||||| |||| ||||||    
T  41830207 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattcaatttacatcaatagaaagagtttcttagttttctc 41830305  T
Q  124 tccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    || ||||||||||||||| |||||||||||||||||||| ||||| ||  |||||||||||||||||||    
T  41830306 tcattccttccatggatgacatgtttcctaacatggtattagagctaacttggtatccaccttgaagga 41830374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 41832613 - 41832745
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  |||||||||||||||||| |||| ||||||||||||||||||||||| ||||  ||||||| ||||||||| |||| ||||||    
T  41832613 agagtagtataaataacttgtaaccaccccattagagggt-acttttctcattttgtaatattcaattttcatcaatagaaagagtttcttagttttctc 41832711  T
Q  124 tccttccttccatggatgccatgtttcctaacat 157  Q
    || |||||||||||||||||||||||||||||||    
T  41832712 tcattccttccatggatgccatgtttcctaacat 41832745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 8083500 - 8083389
Alignment:
Q  44 taaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgcc 143  Q
    ||||||||||||||| |||  |||||| ||||||||||||||| |||||  ||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  8083500 taaccaccccattagaggga-acttttgtcattttgtaatatttcattttcatcaatagaaagagttttttagttttctctccttccttccatggatgcc 8083402  T
Q  144 atgtttcctaaca 156  Q
    |||||||||||||    
T  8083401 atgtttcctaaca 8083389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 4 - 156
Target Start/End: Original strand, 35130531 - 35130683
Alignment:
Q  4 cttcaagtaagtactagtcctagagtagtatatatagttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttct-atcaatac 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  |||| ||||||||||||  ||| | ||||||||    
T  35130531 cttcaagtaagtactagtcctagagtagtatatatagttgtaaccaccccattagtgggttaattcactca-tttgtaatattcactttatcatcaatac 35130629  T
Q  103 aaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 156  Q
    ||| | | | | || |||||||| |||||||  |||||  ||||||||||||||    
T  35130630 aaacattatttgagttttctctcattccttcattggatatcatgtttcctaaca 35130683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 25432090 - 25432205
Alignment:
Q  41 ttgtaaccaccccattagtgggtcactttt-ctcattttgtaatattccatttctatcaatacaaagag-tttgttagatttctctccttccttccatgg 138  Q
    |||||||||||||||||||||| ||||||  ||||||  ||||||||| ||||| ||||||| |||||  |||| || ||||||||| ||||||||||||    
T  25432090 ttgtaaccaccccattagtggg-cactttcactcattc-gtaatattcaatttccatcaatataaagaactttgctacatttctctcattccttccatgg 25432187  T
Q  139 atgccatgtttcctaaca 156  Q
    |||||||||||| |||||    
T  25432188 atgccatgtttcataaca 25432205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 34510821 - 34510870
Alignment:
Q  143 catgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34510821 catgtttcctaacatggtatcagagctaatctggtatccaccttgaagga 34510870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 23613779 - 23613833
Alignment:
Q  76 tttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttcc 130  Q
    ||||||||||| |||||| ||||||| |||||||||||||| ||||||| |||||    
T  23613779 tttgtaatatttcatttccatcaataaaaagagtttgttagttttctctacttcc 23613833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 23613676 - 23613765
Alignment:
Q  28 gtagtatatatagtt-gtaaccaccccattagtgggtcactttt-ctcattttgtaatattccatttctatcaatacaaagagtttgttag 116  Q
    |||||||| |||||| |||||||||  |||||||||  |||||  ||||||| |||||||| |||||| ||||||| ||||||||||||||    
T  23613676 gtagtataaatagtttgtaaccacctaattagtgggaaactttcactcattt-gtaatatttcatttccatcaataaaaagagtttgttag 23613765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 36647525 - 36647451
Alignment:
Q  118 tttctctccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    |||||||| ||| |||  |||||  ||||||| |||| ||||||||||||| |||||||||| || |||||||||    
T  36647525 tttctctcattctttcattggatatcatgttttctaatatggtatcagagctaatctggtattcatcttgaagga 36647451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 65 - 175
Target Start/End: Complemental strand, 26873252 - 26873142
Alignment:
Q  65 acttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaacatggtatca 164  Q
    ||||||||||||| ||||||||| ||||| ||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26873252 acttttctcatttcgtaatattctatttccatcaatagaaagagtttcttagttttctctccttccttccatggatgccatgtttcctaacatggtatca 26873153  T
Q  165 gagcgaatctg 175  Q
    |||||||||||    
T  26873152 gagcgaatctg 26873142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 21256627 - 21256758
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  |||||||||||||||||| |||  ||||||||||||||||||||||||||||  ||||||| |||||||||||||| ||||||    
T  21256627 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattccattttcatcaatagaaagagtttgttagttttctc 21256725  T
Q  124 tccttccttccatggatgccatgtttcctaaca 156  Q
    |||||||||||||||||||||||||||||||||    
T  21256726 tccttccttccatggatgccatgtttcctaaca 21256758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 21254155 - 21254319
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  |||||||| ||||||||| |||  |||||||||||||||||||||||| |||  ||||||| |||||||||||||  ||||||    
T  21254155 agagtagtataaataacttgtaaccgccccattagaggga-acttttctcattttgtaatattcctttttcatcaatagaaagagtttgttacttttctc 21254253  T
Q  124 tccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||| |||     ||||||||||||||||    
T  21254254 tccttccttccatggatgccatgtttcctaacatggtatcatagcatgattggtatccaccttgaa 21254319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 41951861 - 41951695
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttc--tatcaatacaaagagtttgttagat-ttctc 123  Q
    ||||||||||||||||||||| ||||||||||||||  |  || ||||||| |||||||| |||||   |||||||||||  | |||  ||| | |||||    
T  41951861 agtagtatatatagttgtaacaaccccattagtgggataacttcctcattt-gtaatattacattttattatcaatacaacaa-tttcatagctattctc 41951764  T
Q  124 tccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    || |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||    
T  41951763 tcattccttccatggatgccatgtttcctaacatggtattagagctaatctggtatccgccttgaagga 41951695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 4730612 - 4730741
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttag--atttctct 124  Q
    ||||||||||||| ||||||  | ||||||| ||||  |  ||  |||||||||||||||||||||| ||||||||||||||||||||||   ||| |||    
T  4730612 agtagtatatatacttgtaataatcccattaatgggataacttcatcattttgtaatattccatttccatcaatacaaagagtttgttagctttttttct 4730711  T
Q  125 ccttccttccatggatgccatgtttcctaac 155  Q
    |||| | ||||||||||||||||||||||||    
T  4730712 cctt-catccatggatgccatgtttcctaac 4730741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 31339270 - 31339169
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  ||||||||||||||||||||||||| ||  ||||||||||||||||| ||||| ||| ||| ||||||||| |||| ||||||    
T  31339270 agagtagtataaataacttgtaaccaccccattagtgggtcaattcactcattttgtaatattcaatttccatcgatagaaagagtttcttagttttctc 31339171  T
Q  124 tc 125  Q
    ||    
T  31339170 tc 31339169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 27405460 - 27405306
Alignment:
Q  1 tagcttcaagtaagtactagtcctagagtagtatatatagttgtaaccaccccattagtgggtcacttttctcattttgtaatattc-catttctatcaa 99  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||| ||  || | |||||||||||| | || | |||||    
T  27405460 tagcttcaagta-gtactagtcctagagtagtatatatagttgtaatcacctcattaatgggtcaattcactta-tttgtaatattcactttaccatcaa 27405363  T
Q  100 tacaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 156  Q
    |||||| | | | | || |||||||| |||||||  |||||  ||||||||||||||    
T  27405362 tacaaacattatttgagttttctctcattccttcattggatatcatgtttcctaaca 27405306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 35309186 - 35309111
Alignment:
Q  117 atttctctccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    |||| |||| |||||||  |||||  |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35309186 atttttctcattccttcattggatatcatgtttcctaacatggtatcagagctaatctggtatccaccttgaagga 35309111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 41949463 - 41949333
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtgggtcacttttctcattttgtaatattccattt--ctatcaatacaaagagtttgttagat-ttctc 123  Q
    ||||||||||||||||||||| ||||||||||||||  |  || ||||||| |||||||| |||||  ||||||||||||  | |||  ||| | |||||    
T  41949463 agtagtatatatagttgtaacaaccccattagtgggataacttcctcattt-gtaatattacattttactatcaatacaacaa-tttcatagctattctc 41949366  T
Q  124 tccttccttccatggatgccatgtttcctaaca 156  Q
    || ||||||||||||||||||||||||||||||    
T  41949365 tcattccttccatggatgccatgtttcctaaca 41949333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 15424649 - 15424591
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtgggtcacttttctcattttgtaatat 85  Q
    ||||||||||||||||||||| ||||||||||||||  |  || |||||||||||||||    
T  15424649 agtagtatatatagttgtaacaaccccattagtgggataacttcctcattttgtaatat 15424591  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 43233925 - 43233963
Alignment:
Q  118 tttctctccttccttccatggatgccatgtttcctaaca 156  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  43233925 tttctctcattccttccatggatgccatgtttcctaaca 43233963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 30518723 - 30518655
Alignment:
Q  118 tttctctccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccacctt 186  Q
    |||||||  ||||||| ||| ||  |||||||  ||||||||||| ||||| |||||||||||||||||    
T  30518723 tttctcttgttccttctatgtatatcatgttttataacatggtataagagctaatctggtatccacctt 30518655  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 30559063 - 30558995
Alignment:
Q  118 tttctctccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccacctt 186  Q
    |||||||  ||||||| ||| ||  |||||||  ||||||||||| ||||| |||||||||||||||||    
T  30559063 tttctcttgttccttctatgtatatcatgttttataacatggtataagagctaatctggtatccacctt 30558995  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 41326329 - 41326293
Alignment:
Q  27 agtagtatatatagttgtaaccaccccattagtgggt 63  Q
    |||||||||||| |||||||||| |||||||||||||    
T  41326329 agtagtatatatggttgtaaccatcccattagtgggt 41326293  T

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Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 31269577 - 31269462
Alignment:
Q  41 ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggat 140  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||| ||||||||| |||| |||||||||||||||||||||||    
T  31269577 ttgtaaccaccccattagagggt-acttttctcattttgtaatattcaatttccatcaatagaaagagtttcttagttttctctccttccttccatggat 31269479  T
Q  141 gccatgtttcctaacat 157  Q
    |||||||||||||||||    
T  31269478 gccatgtttcctaacat 31269462  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 24038270 - 24038437
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  |||||||||| ||||||| ||| |||||||||||| ||||||||||||||||  ||||||| ||| ||||| |||| ||||||    
T  24038270 agagtagtataaataacttgtaaccactccattagaggg-cacttttctcatattgtaatattccattttcatcaatagaaaaagtttcttagttttctc 24038368  T
Q  124 tccttccttccatggatgccatgtttcctaacatggtatcagagcgaatctggtatccaccttgaagga 192  Q
    || ||||||||||||||||||||||| ||||||||||||||||||     |||||||||||||||||||    
T  24038369 tcattccttccatggatgccatgttttctaacatggtatcagagcctggttggtatccaccttgaagga 24038437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 31180245 - 31180355
Alignment:
Q  44 taaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgcc 143  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  31180245 taaccaccccattagaggg--acttttctcattttgtaatattccatttccatcaatagaaagagtttcttagttttctctccttccttccatggatgcc 31180342  T
Q  144 atgtttcctaaca 156  Q
    ||| |||||||||    
T  31180343 atgcttcctaaca 31180355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 24039465 - 24039596
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  ||||||||||| |||||| ||| |||||||||||| ||||||||||||||||  ||||||| ||| ||||| |||| ||||||    
T  24039465 agagtagtataaataacttgtaaccacctcattagaggg-cacttttctcatattgtaatattccattttcatcaatagaaaaagtttcttagttttctc 24039563  T
Q  124 tccttccttccatggatgccatgtttcctaaca 156  Q
    || ||||||||||||||||||||||| ||||||    
T  24039564 tcattccttccatggatgccatgttttctaaca 24039596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 36402811 - 36402684
Alignment:
Q  29 tagtatatatagtt-gtaaccaccccattagtgggtcactttt-ctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctctcc 126  Q
    ||||||| |||||| ||||||||||||||||||||| |||||  ||||||| ||||||||| ||||| |||||||||||||||||| |||||||||||||    
T  36402811 tagtataaatagtttgtaaccaccccattagtgggtaactttcactcattt-gtaatattctatttccatcaatacaaagagtttg-tagatttctctcc 36402714  T
Q  127 ttccttccatggatgccatgtttcctaaca 156  Q
    ||| ||||||||||  |||||||| |||||    
T  36402713 ttcattccatggatatcatgtttcataaca 36402684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 45391971 - 45391919
Alignment:
Q  13 agtactagtcctagagtagtatatatagttgtaaccaccccattagtgggtca 65  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45391971 agtattagtcctagagtagtatatatagttgtaaccaccccattagtgggtca 45391919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 27750894 - 27750845
Alignment:
Q  13 agtactagtcctagagtagtatatatagttgtaaccaccccattagtggg 62  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  27750894 agtattagtcctatagtagtatatatagttgtaaccacctcattagtggg 27750845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 2159 - 2028
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  |||||||||||||||||| |||  ||||||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||||    
T  2159 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattccatttccatcaatagaaagagtttcttagttttctc 2061  T
Q  124 tccttccttccatggatgccatgtttcctaaca 156  Q
    |||||||||||||||||||||||||||| ||||    
T  2060 tccttccttccatggatgccatgtttcccaaca 2028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 111675 - 111544
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctc 123  Q
    ||||||||||| |||  |||||||||||||||||| |||  ||||||||||||||||||||||||||||  ||||||| ||||||||| ||| |||||||    
T  111675 agagtagtataaataacttgtaaccaccccattagaggga-acttttctcattttgtaatattccatttaaatcaataaaaagagtttattaaatttctc 111577  T
Q  124 tccttccttccatggatgccatgtttcctaaca 156  Q
    |||||||||||||||||||||||||||||||||    
T  111576 tccttccttccatggatgccatgtttcctaaca 111544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 246 - 361
Alignment:
Q  41 ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggat 140  Q
    |||||||||||||||||| |||  ||||||||||||||||||||||||||||  ||||||| ||||||||| |||| ||||||||||||||| |||||||    
T  246 ttgtaaccaccccattagaggga-acttttctcattttgtaatattccattttcatcaatagaaagagtttcttagttttctctccttcctttcatggat 344  T
Q  141 gccatgtttcctaacat 157  Q
    |||||||||||||||||    
T  345 gccatgtttcctaacat 361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 651 - 782
Alignment:
Q  25 agagtagtatatatag-ttgtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagag-tttgttagatttct 122  Q
    ||||||||||| |||  ||||| |||||||||||| |||| ||||  |||||||| |||||||| ||||| |||||||||||||| |||  ||  |||||    
T  651 agagtagtataaataacttgtatccaccccattagagggtgacttcactcatttt-taatattcaatttccatcaatacaaagagctttactacttttct 749  T
Q  123 ctccttccttccatggatgccatgtttcctaac 155  Q
    ||| ||||||| | |||||||||||||||||||    
T  750 ctcattccttcgacggatgccatgtttcctaac 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 463 - 408
Alignment:
Q  101 acaaagagtttgttagatttctctccttccttccatggatgccatgtttcctaaca 156  Q
    |||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  463 acaacgagtttgttagatttctctcattccttccatggatgccttgtttcctaaca 408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 4622 - 4719
Alignment:
Q  25 agagtagtatatatagtt-gtaaccaccccattagtgggtcacttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttct 122  Q
    ||||||||||| ||| || |||||||||| ||||| |||  ||||||  |||||||||||||| |||||  ||||||| ||||||||| |||| |||||    
T  4622 agagtagtataaataatttgtaaccaccctattagaggga-actttttccattttgtaatatttcattttcatcaatagaaagagtttcttagttttct 4719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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