View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7667_low_6 (Length: 306)

Name: NF7667_low_6
Description: NF7667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7667_low_6
NF7667_low_6
[»] chr1 (6 HSPs)
chr1 (38-297)||(29850137-29850400)
chr1 (192-296)||(9370813-9370918)
chr1 (193-253)||(31860938-31860998)
chr1 (241-297)||(15697430-15697486)
chr1 (199-228)||(13694167-13694196)
chr1 (40-72)||(31860641-31860673)
[»] chr3 (3 HSPs)
chr3 (41-295)||(31424755-31425006)
chr3 (192-297)||(25735396-25735503)
chr3 (199-227)||(49906862-49906890)
[»] chr6 (9 HSPs)
chr6 (193-297)||(6446057-6446160)
chr6 (201-297)||(12996095-12996190)
chr6 (201-297)||(13025239-13025334)
chr6 (48-111)||(13030305-13030368)
chr6 (42-104)||(6445851-6445913)
chr6 (193-297)||(29064871-29064976)
chr6 (193-297)||(29119725-29119830)
chr6 (48-104)||(12996681-12996737)
chr6 (199-231)||(67035-67067)
[»] chr4 (6 HSPs)
chr4 (193-295)||(35028758-35028861)
chr4 (40-145)||(35028901-35029006)
chr4 (198-297)||(45538395-45538492)
chr4 (192-296)||(14272231-14272331)
chr4 (198-228)||(24572071-24572101)
chr4 (198-228)||(35765447-35765477)
[»] chr2 (5 HSPs)
chr2 (56-263)||(36420417-36420630)
chr2 (213-297)||(10498495-10498579)
chr2 (200-279)||(37598614-37598693)
chr2 (200-279)||(16643806-16643885)
chr2 (198-239)||(28863827-28863868)
[»] chr8 (3 HSPs)
chr8 (198-297)||(37044155-37044254)
chr8 (198-228)||(72800-72830)
chr8 (192-237)||(16863474-16863519)
[»] chr7 (3 HSPs)
chr7 (192-293)||(44272014-44272115)
chr7 (198-297)||(5467639-5467737)
chr7 (213-297)||(15670335-15670418)
[»] chr5 (3 HSPs)
chr5 (194-240)||(11079724-11079770)
chr5 (200-279)||(30485686-30485766)
chr5 (40-72)||(30335610-30335642)
[»] scaffold0262 (1 HSPs)
scaffold0262 (40-72)||(7788-7820)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 38 - 297
Target Start/End: Original strand, 29850137 - 29850400
Alignment:
Q  38 tctgtcaaacaattaaataatactaaatttaataaagatgttacaagagatcaatcaaacgctctagtagaatatccgtgcatagggacggttgagcgtg 137  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29850137 tctgtcaaataattaaataatactaaatttaataaagacgttacaagagatcaatcaaacgctctagtagaatatccgtgcatggggacggttgagcgtg 29850236  T
Q  138 ttgcgctcnnnnnnnggaagcaagcaattgcgtagaaattatt----nnnnnnnnnnntatctttgtattgatatatgaataaaaatatagacatatgca 233  Q
    ||||||||       |||||||||||||||| |||||||||||               ||||||||||||||||||||||||||||||||||||||||||    
T  29850237 ttgcgctctttttttggaagcaagcaattgcatagaaattattaaaaaaaaataaaaatatctttgtattgatatatgaataaaaatatagacatatgca 29850336  T
Q  234 caaattatacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgtataaatt 297  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  29850337 caaattatacaaaacattatttctgtattaaatacgagtaaaaatatagacatgtgtataaatt 29850400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 296
Target Start/End: Original strand, 9370813 - 9370918
Alignment:
Q  192 tatctttgtattgatatatgaataaaaatatagacatatgcacaaattatac-aaaacattatttatgtattaaatacgagtaaaaatatggacatgtgt 290  Q
    |||||||||||||||||||||||||||||||| ||| ||  ||||||| ||| |||| || |||||||||||||||| ||||||| |||| |||||||||    
T  9370813 tatctttgtattgatatatgaataaaaatataaacagatatacaaattgtacaaaaaaatcatttatgtattaaatatgagtaaatatatagacatgtgt 9370912  T
Q  291 ataaat 296  Q
    ||||||    
T  9370913 ataaat 9370918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 31860938 - 31860998
Alignment:
Q  193 atctttgtattgatatatgaataaaaatatagacatatgcacaaattatacaaaacattat 253  Q
    ||||||||||||||| |||||||||| |||||||||||| ||||||| ||||||| |||||    
T  31860938 atctttgtattgatacatgaataaaactatagacatatgtacaaattgtacaaaaaattat 31860998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 15697486 - 15697430
Alignment:
Q  241 tacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgtataaatt 297  Q
    ||||||| |||||||||| |||||||| |||||||||||| ||||||| ||||||||    
T  15697486 tacaaaaaattatttatgcattaaatatgagtaaaaatatagacatgtatataaatt 15697430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 228
Target Start/End: Complemental strand, 13694196 - 13694167
Alignment:
Q  199 gtattgatatatgaataaaaatatagacat 228  Q
    ||||||||||||||||||||||||||||||    
T  13694196 gtattgatatatgaataaaaatatagacat 13694167  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 31860641 - 31860673
Alignment:
Q  40 tgtcaaacaattaaataatactaaatttaataa 72  Q
    ||||||| |||||||||||||||||||||||||    
T  31860641 tgtcaaataattaaataatactaaatttaataa 31860673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 41 - 295
Target Start/End: Complemental strand, 31425006 - 31424755
Alignment:
Q  41 gtcaaacaattaaataatactaaatttaataaagatgttacaagagatcaatcaaacgctctagtagaatatccgtgcatagggacggttgagcgtgttg 140  Q
    |||||| |||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||  ||||||||||||||||  ||| |||||||||||||    
T  31425006 gtcaaataattaaataatattaactttaataaagatgtcacaagagatcaatcaaatgctctaacagaatatccgtgcatacagacagttgagcgtgttg 31424907  T
Q  141 cgctcnnnnnnnggaagcaag---caattgcgtagaaattattnnnnnnnnnnntatctttgtattgatatatgaataaaaatatagacatatgcacaaa 237  Q
    |||||       |||||||||   || |||||||||||| |              ||| ||||||||||||||||||||||||||||||| |||||||||    
T  31424906 cgctcttcttttggaagcaagtcgcacttgcgtagaaataa------aaaaaaaaatcattgtattgatatatgaataaaaatatagacagatgcacaaa 31424813  T
Q  238 ttatacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgtataaa 295  Q
    || |||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  31424812 ttgtacaaaacattatttcagtattaaatacgagtaaaaatatagacatgtgtataaa 31424755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 25735396 - 25735503
Alignment:
Q  192 tatctttgtattgatatatgaataaaaatatagacatatgcacaaattatacaaaaca--ttatttatgtattaaatacgagtaaaaatatggacatgtg 289  Q
    ||||| ||||||  ||||| |||||||||||||||||||| ||||||| || |||| |  ||||||   ||||||||| |||||||||||| ||||||||    
T  25735396 tatctctgtatttttatataaataaaaatatagacatatgtacaaattgtaaaaaaaaaattatttccatattaaatatgagtaaaaatatagacatgtg 25735495  T
Q  290 tataaatt 297  Q
    ||||||||    
T  25735496 tataaatt 25735503  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 49906890 - 49906862
Alignment:
Q  199 gtattgatatatgaataaaaatatagaca 227  Q
    |||||||||||||||||||||||||||||    
T  49906890 gtattgatatatgaataaaaatatagaca 49906862  T

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Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 6446057 - 6446160
Alignment:
Q  193 atctttgtattgatatatgaataaaaatatagacatatgcacaaattatacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgtat 292  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  6446057 atctttgtattgatatatgaataaaa-tatagacagatgaacaaattgtacaaaacattatttatgtataaaatacgagtaaaaatatagacatgtgtat 6446155  T
Q  293 aaatt 297  Q
    |||||    
T  6446156 aaatt 6446160  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 201 - 297
Target Start/End: Complemental strand, 12996190 - 12996095
Alignment:
Q  201 attgatatatgaataaaaatatagacatatgcacaaattatacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgtataaatt 297  Q
    ||||||||||||||||||||||| ||| ||| ||||||| ||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12996190 attgatatatgaataaaaatata-acagatgaacaaattgtaataaacattatttatgtattaaatacgagtaaaaatatagacatgtgtataaatt 12996095  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 201 - 297
Target Start/End: Complemental strand, 13025334 - 13025239
Alignment:
Q  201 attgatatatgaataaaaatatagacatatgcacaaattatacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgtataaatt 297  Q
    |||||||||||||| |||||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  13025334 attgatatatgaatgaaaatata-acagatgaacaaattgtacaaaacattatttatgtattaaatacgagtaaaattatagacatgtgtattaatt 13025239  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 13030368 - 13030305
Alignment:
Q  48 aattaaataatactaaatttaataaagatgttacaagagatcaatcaaacgctctagtagaata 111  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||||    
T  13030368 aattaaataatattaaatttaataaagacgttacaagagatcaatcaaatgctctagcagaata 13030305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 6445851 - 6445913
Alignment:
Q  42 tcaaacaattaaataatactaaatttaataaagatgttacaagagatcaatcaaacgctctag 104  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  6445851 tcaaataattaaataatactaaatttaataaagacattacaagagatcaatcaaatgctctag 6445913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 29064871 - 29064976
Alignment:
Q  193 atctttgtattgatatatgaataaaaatatagacatatgcacaaatta-tacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgta 291  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||  | |||| | |||||   ||||||||| |||||| ||||  |||| |||||    
T  29064871 atctctgtattgatatatgaataaaaatatagacatatgtacaaattacaaaaaaaaaatattttcatattaaatatgagtaagaataatgacaggtgta 29064970  T
Q  292 taaatt 297  Q
    ||||||    
T  29064971 taaatt 29064976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 29119725 - 29119830
Alignment:
Q  193 atctttgtattgatatatgaataaaaatatagacatatgcacaaatta-tacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgta 291  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||  | |||| | |||||   ||||||||| |||||| ||||  |||| |||||    
T  29119725 atctctgtattgatatatgaataaaaatatagacatatgtacaaattacaaaaaaaaaatattttcatattaaatatgagtaagaataatgacaggtgta 29119824  T
Q  292 taaatt 297  Q
    ||||||    
T  29119825 taaatt 29119830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 12996737 - 12996681
Alignment:
Q  48 aattaaataatactaaatttaataaagatgttacaagagatcaatcaaacgctctag 104  Q
    |||||||||||| ||||||||||||||||  |||||||||||||||||| |||||||    
T  12996737 aattaaataatattaaatttaataaagattctacaagagatcaatcaaatgctctag 12996681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 67067 - 67035
Alignment:
Q  199 gtattgatatatgaataaaaatatagacatatg 231  Q
    |||||||||||||||||||||||||||||||||    
T  67067 gtattgatatatgaataaaaatatagacatatg 67035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 35028861 - 35028758
Alignment:
Q  193 atctttgtattgatatatgaataaaaa-tatagacatatgcacaaattatacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgta 291  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  35028861 atctttgtattgatatatgaataaaaaatatagacagatgcacaaactgtacaaaacattatttctgtattaaatacgagtaaaaatatagacatgtgta 35028762  T
Q  292 taaa 295  Q
    ||||    
T  35028761 taaa 35028758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 35029006 - 35028901
Alignment:
Q  40 tgtcaaacaattaaataatactaaatttaataaagatgttacaagagatcaatcaaacgctctagtagaatatccgtgcatagggacggttgagcgtgtt 139  Q
    ||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||  |||||| |||||| |||||||||  ||||||||||||||||    
T  35029006 tgtcaaataattaaataatactaaatttaataaagattttacaatagatcaatcaaatactctagcagaatacccgtgcatatagacggttgagcgtgtt 35028907  T
Q  140 gcgctc 145  Q
    ||||||    
T  35028906 gcgctc 35028901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 45538395 - 45538492
Alignment:
Q  198 tgtattgatatatgaataaaaatatagacatatgcacaaattatacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgtataaatt 297  Q
    |||||||||||||||||||||||| ||||||||| ||||| | ||||||| |||||||  |||||||||| ||||||||||||  | |||||||||||||    
T  45538395 tgtattgatatatgaataaaaatacagacatatgtacaaactgtacaaaaaattatttccgtattaaatatgagtaaaaatat--aaatgtgtataaatt 45538492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 14272331 - 14272231
Alignment:
Q  192 tatctttgtattgatatatgaataaaaatatagacatatgcacaaattatacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgta 291  Q
    ||||| |||||| ||||||||||||||||||||||||||| | | ||| |||||||    |||||  ||||||||| |||||||| ||| ||||||||||    
T  14272331 tatctatgtattaatatatgaataaaaatatagacatatgtatatattgtacaaaa----atttacatattaaatatgagtaaaagtatagacatgtgta 14272236  T
Q  292 taaat 296  Q
    |||||    
T  14272235 taaat 14272231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 24572071 - 24572101
Alignment:
Q  198 tgtattgatatatgaataaaaatatagacat 228  Q
    |||||||||||||||||||||||||||||||    
T  24572071 tgtattgatatatgaataaaaatatagacat 24572101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 35765447 - 35765477
Alignment:
Q  198 tgtattgatatatgaataaaaatatagacat 228  Q
    |||||||||||||||||||||||||||||||    
T  35765447 tgtattgatatatgaataaaaatatagacat 35765477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 56 - 263
Target Start/End: Complemental strand, 36420630 - 36420417
Alignment:
Q  56 aatactaaatttaataaagatgttacaagagatcaatcaaacgctctagtagaatatccgtgcatagggacggttgagcgtgttgcgctcnnnnnnngga 155  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||  ||||||||||| ||||||||||||| |||       |||    
T  36420630 aatactaaatttaataaagacgttacaagagatcaatcaaatgctctagtagaatacccaggcatagggacgattgagcgtgttgcactctttttttgga 36420531  T
Q  156 agca---agcaattgcgtagaaatt---attnnnnnnnnnnntatctttgtattgatatatgaataaaaatatagacatatgcacaaattatacaaaaca 249  Q
    | ||    ||||||| |||||||||   | |            ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  36420530 aacatgtcgcaattgtgtagaaattaaaaataaaaataaaaagatctttgtattgatatatgaataaaaatatagacagatgcacaaattgtacaaaaca 36420431  T
Q  250 ttatttatgtatta 263  Q
    |||||| |||||||    
T  36420430 ttatttttgtatta 36420417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 10498579 - 10498495
Alignment:
Q  213 ataaaaatatagacatatgcacaaattatacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgtataaatt 297  Q
    ||||||||||||||||||| ||||||| |||||||  ||||||   ||||||||| |||||||||||| || | |||||||||||    
T  10498579 ataaaaatatagacatatgtacaaattgtacaaaaatttatttccatattaaatatgagtaaaaatatagagacgtgtataaatt 10498495  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 37598693 - 37598614
Alignment:
Q  200 tattgatatatgaataaaaatatagacatatgcacaaattatacaaaacattatttatgtattaaatacgagtaaaaata 279  Q
    ||||| |||||||||||||||||||| | ||| ||||||| ||||||| ||||||| | ||||||||| | |||||||||    
T  37598693 tattgttatatgaataaaaatatagataaatgtacaaattgtacaaaaaattatttctttattaaatatgtgtaaaaata 37598614  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 16643885 - 16643806
Alignment:
Q  200 tattgatatatgaataaaaa--tatagacatatgcacaaattatacaaaacattatttatgtattaaatacgagtaaaaata 279  Q
    ||||||||||||||||||||  |||||| ||||| |||||||||  |||| |||||||  |||||||||||||||| |||||    
T  16643885 tattgatatatgaataaaaatatatagatatatgtacaaattat--aaaaaattatttccgtattaaatacgagtagaaata 16643806  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 28863827 - 28863868
Alignment:
Q  198 tgtattgatatatgaataaaaatatagacatatgcacaaatt 239  Q
    |||||||||||||||||||||||||||||| ||| |||||||    
T  28863827 tgtattgatatatgaataaaaatatagacacatgtacaaatt 28863868  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 198 - 297
Target Start/End: Complemental strand, 37044254 - 37044155
Alignment:
Q  198 tgtattgatatatgaataaaaatatagacatatgcacaaattatacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgtataaatt 297  Q
    ||||||||||||||||||||||||||||  |||| ||||||| ||||||| |||||||  |||||||||| |||||||||||| ||||||||||||||||    
T  37044254 tgtattgatatatgaataaaaatatagatgtatgtacaaattgtacaaaaaattatttccgtattaaatatgagtaaaaatatagacatgtgtataaatt 37044155  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 72800 - 72830
Alignment:
Q  198 tgtattgatatatgaataaaaatatagacat 228  Q
    |||||||||||||||||||||||||||||||    
T  72800 tgtattgatatatgaataaaaatatagacat 72830  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 16863474 - 16863519
Alignment:
Q  192 tatctttgtattgatatatgaataaaaatatagacatatgcacaaa 237  Q
    ||||| || ||||||||||||||||||||||||||| ||| |||||    
T  16863474 tatctctgcattgatatatgaataaaaatatagacagatgtacaaa 16863519  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 293
Target Start/End: Complemental strand, 44272115 - 44272014
Alignment:
Q  192 tatctttgtattgatatatgaataaaaatatagacatatgcacaaattatacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgta 291  Q
    ||||||||||||||||||||||||| ||||||| || ||| ||||||||||||||| |||||||  | ||||||||  ||| |||||||  | |||||||    
T  44272115 tatctttgtattgatatatgaataacaatataggcaaatgtacaaattatacaaaaaattatttccgcattaaatataagtgaaaatataaatatgtgta 44272016  T
Q  292 ta 293  Q
    ||    
T  44272015 ta 44272014  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 5467639 - 5467737
Alignment:
Q  198 tgtattgatatatgaataaaaatatagacatatgcacaaattatac-aaaacattatttatgtattaaatacgagtaaaaatatggacatgtgtataaat 296  Q
    |||||||||||||||||||||||||||||  ||| | ||||| ||| |||| | || || ||||||||||| |||||||||||| |||| | ||||||||    
T  5467639 tgtattgatatatgaataaaaatatagac--atgtataaattgtacaaaaaaaatagttttgtattaaatatgagtaaaaatatagacacgcgtataaat 5467736  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 297
Target Start/End: Original strand, 15670335 - 15670418
Alignment:
Q  213 ataaaaatatagacatatgcacaaattatacaaaacattatttatgtattaaatacgagtaaaaatatggacatgtgtataaatt 297  Q
    ||||||||| ||||||||| |||| ||  |||||| ||| |||  |||||||||| ||||||| |||| |||| |||||||||||    
T  15670335 ataaaaataaagacatatgtacaatttggacaaaa-attgtttcggtattaaatatgagtaaacatatagacaagtgtataaatt 15670418  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 11079770 - 11079724
Alignment:
Q  194 tctttgtattgatatatgaataaaaatatagacatatgcacaaatta 240  Q
    ||||||||||||||| |||||||||||||||||||||| | ||||||    
T  11079770 tctttgtattgatatttgaataaaaatatagacatatgtataaatta 11079724  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 30485686 - 30485766
Alignment:
Q  200 tattgatatatgaataaaaatatagacatatgcacaaattatac-aaaacattatttatgtattaaatacgagtaaaaata 279  Q
    |||||||||||||||||||||||||| ||||| | ||| | ||| |||| ||||||||| ||| ||||| ||||| |||||    
T  30485686 tattgatatatgaataaaaatatagatatatgtataaactgtacaaaaaaattatttatttataaaatatgagtacaaata 30485766  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 30335642 - 30335610
Alignment:
Q  40 tgtcaaacaattaaataatactaaatttaataa 72  Q
    |||||||||||||||||||| ||||||||||||    
T  30335642 tgtcaaacaattaaataatattaaatttaataa 30335610  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 7788 - 7820
Alignment:
Q  40 tgtcaaacaattaaataatactaaatttaataa 72  Q
    ||||||| |||||||||||||||||||||||||    
T  7788 tgtcaaataattaaataatactaaatttaataa 7820  T

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