View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7667_low_7 (Length: 291)
Name: NF7667_low_7
Description: NF7667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7667_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 43260328 - 43260602
Alignment:
| Q |
1 |
ttactatattctgcattattgagtgttatctagtctcagtcacctatcaaaaaa-ccacttcaacagaacacagtgcatt---gtttaccaaatcaaatt |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43260328 |
ttactatattctgcattattgagtgttatctagtctcagtcacctatcaaaaaaaccacttcaacagaacacagtgcattattgtttaccaaatcaaatt |
43260427 |
T |
|
| Q |
97 |
ctaatttccatggaacttgatgcttcatcaacttcaaacggttacttgttcatcctcaaaggactttctctcattccaatatggcattacctcctcactc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43260428 |
ctaatttccatggaacttgatgcttcatcaacttcaaacggttacttgttcatcctcaaaggactttctctgattccaatatggcattacctcctcactc |
43260527 |
T |
|
| Q |
197 |
taactactcttcttacttgctttctctacaatttccttgaaattcatttccttcaagatctcttctctggattct |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43260528 |
taactactcttcttacttgctttctctacaatttccttgaaatccatttccttcaagatctcttctctggattct |
43260602 |
T |
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