View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7667_low_9 (Length: 240)

Name: NF7667_low_9
Description: NF7667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7667_low_9
NF7667_low_9
[»] chr8 (5 HSPs)
chr8 (15-123)||(10279365-10279473)
chr8 (15-76)||(759871-759932)
chr8 (15-49)||(16307359-16307393)
chr8 (15-49)||(37250752-37250786)
chr8 (15-44)||(32917368-32917397)
[»] scaffold0119 (1 HSPs)
scaffold0119 (15-49)||(41046-41080)
[»] chr6 (1 HSPs)
chr6 (15-49)||(20872935-20872969)
[»] chr5 (2 HSPs)
chr5 (15-49)||(4062611-4062645)
chr5 (15-49)||(7332524-7332558)
[»] chr4 (2 HSPs)
chr4 (15-57)||(35695693-35695735)
chr4 (15-49)||(55050497-55050531)
[»] chr3 (1 HSPs)
chr3 (17-57)||(9264817-9264857)
[»] chr2 (2 HSPs)
chr2 (17-57)||(45055177-45055217)
chr2 (17-57)||(45660634-45660674)


Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 10279473 - 10279365
Alignment:
Q  15 gagtttgttgaaggagttggagatttttgggtaataaatttacaccaaaattagacctaattgnnnnnnntgatacatcattgtaaaagatcaaaattgt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||||     
T  10279473 gagtttgttgaaggagttggagatttttgggtaataaatttacaccaaaattagacctaattgaaaaaaatgatacatcattgtaaaagaccaaaattga 10279374  T
Q  115 agtaatttc 123  Q
    |||||||||    
T  10279373 agtaatttc 10279365  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 759932 - 759871
Alignment:
Q  15 gagtttgttgaaggagttggagatttttgggtaataaatttacaccaaaattagacctaatt 76  Q
    |||||||||||||||||||| ||||||||| |||| |||||||   |||||||||| |||||    
T  759932 gagtttgttgaaggagttggggatttttggataattaatttaccaaaaaattagacttaatt 759871  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 16307359 - 16307393
Alignment:
Q  15 gagtttgttgaaggagttggagatttttgggtaat 49  Q
    ||||||||| |||||||||||||||||||||||||    
T  16307359 gagtttgttaaaggagttggagatttttgggtaat 16307393  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 37250752 - 37250786
Alignment:
Q  15 gagtttgttgaaggagttggagatttttgggtaat 49  Q
    ||||||||| |||||||||||||||||||||||||    
T  37250752 gagtttgttaaaggagttggagatttttgggtaat 37250786  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 32917397 - 32917368
Alignment:
Q  15 gagtttgttgaaggagttggagatttttgg 44  Q
    ||||||||||||||||||||||||||||||    
T  32917397 gagtttgttgaaggagttggagatttttgg 32917368  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 41080 - 41046
Alignment:
Q  15 gagtttgttgaaggagttggagatttttgggtaat 49  Q
    ||||||||| |||||||||||||||||||||||||    
T  41080 gagtttgttaaaggagttggagatttttgggtaat 41046  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 20872969 - 20872935
Alignment:
Q  15 gagtttgttgaaggagttggagatttttgggtaat 49  Q
    ||||||||| |||||||||||||||||||||||||    
T  20872969 gagtttgttaaaggagttggagatttttgggtaat 20872935  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 4062645 - 4062611
Alignment:
Q  15 gagtttgttgaaggagttggagatttttgggtaat 49  Q
    ||||||||| |||||||||||||||||||||||||    
T  4062645 gagtttgttaaaggagttggagatttttgggtaat 4062611  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 7332524 - 7332558
Alignment:
Q  15 gagtttgttgaaggagttggagatttttgggtaat 49  Q
    ||||||||| |||||||||||||||||||||||||    
T  7332524 gagtttgttaaaggagttggagatttttgggtaat 7332558  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 35695735 - 35695693
Alignment:
Q  15 gagtttgttgaaggagttggagatttttgggtaataaatttac 57  Q
    |||||| ||||||||||||||||||||||| |||||| |||||    
T  35695735 gagtttattgaaggagttggagatttttggataataactttac 35695693  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 55050531 - 55050497
Alignment:
Q  15 gagtttgttgaaggagttggagatttttgggtaat 49  Q
    ||||||||| |||||||||||||||||||||||||    
T  55050531 gagtttgttaaaggagttggagatttttgggtaat 55050497  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 9264857 - 9264817
Alignment:
Q  17 gtttgttgaaggagttggagatttttgggtaataaatttac 57  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  9264857 gtttgttgaaggagtttgagatatttgggtaattaatttac 9264817  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 45055177 - 45055217
Alignment:
Q  17 gtttgttgaaggagttggagatttttgggtaataaatttac 57  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  45055177 gtttgttgaaggagtttgagatatttgggtaattaatttac 45055217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 45660674 - 45660634
Alignment:
Q  17 gtttgttgaaggagttggagatttttgggtaataaatttac 57  Q
    |||||||||||||||| ||||| |||||||||| |||||||    
T  45660674 gtttgttgaaggagtttgagatatttgggtaattaatttac 45660634  T

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