View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7668_low_1 (Length: 348)
Name: NF7668_low_1
Description: NF7668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7668_low_1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 328
Target Start/End: Complemental strand, 28275783 - 28275467
Alignment:
| Q |
13 |
aatatgtgcagaccaaaacctaaaaatttgagaagactgaagaataatttaataaatcctagagtatattccttgaatactgtcccttgtgtgtattatc |
112 |
Q |
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| T |
28275783 |
aatatgtgcagaccaaaacctaaaaaatagagaagactgaagaataatttaataaatcctagagtatattccttgaatactgtcccttgtgtgtattatc |
28275684 |
T |
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| Q |
113 |
atgattaaattagacagtttgaaactttgtattccttttatactattattaccttaaggttaatcatgcatatgtctatatgaaaaatcacaaacacaca |
212 |
Q |
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| T |
28275683 |
atgattaaattagacagtttgaaactttgtattccttttatactattattaccttaaggttaatcatgcatatgtctatatgaaaaatcacaaacacaca |
28275584 |
T |
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| Q |
213 |
aaaacatgattttaaacgcgcatgcaagcacgcgggaggttcacatgaat-ttttatatagatatgagctcaatttcattatgaaattgtcattattaat |
311 |
Q |
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| T |
28275583 |
aaaacatgattttaaacgcgcatgcaagcacgcgggaggttcacatgaattttttatatagatatgagctcaattccattatgaaattgtcattattaat |
28275484 |
T |
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| Q |
312 |
tttgtttagtataatct |
328 |
Q |
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| T |
28275483 |
tttgtttagtataatct |
28275467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 67715 - 67778
Alignment:
| Q |
205 |
aacacacaaaaacatgattttaaacgcgcatgcaagcacgcgggaggttcacatgaatttttata |
269 |
Q |
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| T |
67715 |
aacacacgaaaacatgcttt-aaacgcgcgtgcaagcatgcaggaggttcacttcaatttttata |
67778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 40898569 - 40898506
Alignment:
| Q |
205 |
aacacacaaaaacatgattttaaacgcgcatgcaagcacgcgggaggttcacatgaatttttata |
269 |
Q |
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||||||| |||||||| ||| |||||||| |||||||| || |||||||||| | |||||||||| |
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| T |
40898569 |
aacacacgaaaacatgcttt-aaacgcgcgtgcaagcatgcaggaggttcacttcaatttttata |
40898506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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