View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7670_high_10 (Length: 250)

Name: NF7670_high_10
Description: NF7670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7670_high_10
NF7670_high_10
[»] chr6 (1 HSPs)
chr6 (13-250)||(20643098-20643335)
[»] chr4 (5 HSPs)
chr4 (13-204)||(33246167-33246358)
chr4 (144-208)||(42469339-42469403)
chr4 (13-64)||(13775618-13775669)
chr4 (203-250)||(33246640-33246687)
chr4 (13-49)||(42469447-42469483)
[»] chr7 (5 HSPs)
chr7 (13-108)||(19788221-19788316)
chr7 (13-208)||(21767740-21767935)
chr7 (13-49)||(3934065-3934101)
chr7 (144-208)||(42679478-42679542)
chr7 (13-49)||(42679586-42679622)
[»] chr8 (1 HSPs)
chr8 (13-49)||(4878461-4878497)
[»] chr3 (1 HSPs)
chr3 (13-64)||(4532303-4532354)
[»] scaffold0050 (1 HSPs)
scaffold0050 (144-208)||(30780-30844)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 20643098 - 20643335
Alignment:
Q  13 aatatatgatgaagaatatattcttgctgaatatggtaaatcttgggaggttnnnnnnngctcgcaaacaacagcagccaaagaagaaccatggctagga 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||       ||| |||||||||||||||||||||||||||||||||||||    
T  20643098 aatatatgatgaagaatatattcttgttgaatatggtaaatcttgggaggttaaaaaaagcttgcaaacaacagcagccaaagaagaaccatggctagga 20643197  T
Q  113 tatgatatctttcaaactctttgcacctctcaagacatggcttgtaacgacatcatcgataacacaagatgtgaaaacattgcatcaaactatataataa 212  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20643198 tatgatatctttcaaactcattgcacctctcaagacatggcttgtaacgacatcatcgatagcacaagatgtgaaaacattgcatcaaactatataataa 20643297  T
Q  213 ttcctattatcgcatagaatgttgaattatttgacatt 250  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  20643298 ttcctattatcgcatagaatgttgaattatttgccatt 20643335  T

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Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 33246167 - 33246358
Alignment:
Q  13 aatatatgatgaagaatatattcttgctgaatatggtaaatcttgggaggttnnnnnnngctcgcaaacaacagcagccaaagaagaaccatggctagga 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||       ||| ||||||||||||| |||||||||||||||||||||||    
T  33246167 aatatatgacgaagaatatattcttgctgaatatggtaaatcttgagaggttaaaaaaagcttgcaaacaacagcaaccaaagaagaaccatggctagga 33246266  T
Q  113 tatgatatctttcaaactctttgcacctctcaagacatggcttgtaacgacatcatcgataacacaagatgtgaaaacattgcatcaaacta 204  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  33246267 tatgatatttttcaaactcattgcacctctcaagacatggcttgtaacgacatcatcgatagcacaatatgtgaaaacattgcatcaaacta 33246358  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 42469403 - 42469339
Alignment:
Q  144 aagacatggcttgtaacgacatcatcgataacacaagatgtgaaaacattgcatcaaactatata 208  Q
    ||||||||| || ||| | |||||||||||||| |||  |||||||| |||||||||||||||||    
T  42469403 aagacatggtttttaatgtcatcatcgataacaaaagtggtgaaaacgttgcatcaaactatata 42469339  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 13775618 - 13775669
Alignment:
Q  13 aatatatgatgaagaatatattcttgctgaatatggtaaatcttgggaggtt 64  Q
    ||||||||| ||| ||||||||| ||||||||||||| |||||| |||||||    
T  13775618 aatatatgacgaaaaatatattcatgctgaatatggtgaatctttggaggtt 13775669  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 33246640 - 33246687
Alignment:
Q  203 tatataataattcctattatcgcatagaatgttgaattatttgacatt 250  Q
    |||||||||||||||||||||  | |||||||||||||||||| ||||    
T  33246640 tatataataattcctattatccgagagaatgttgaattatttgtcatt 33246687  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 42469483 - 42469447
Alignment:
Q  13 aatatatgatgaagaatatattcttgctgaatatggt 49  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  42469483 aatatatgacgaagaatatgttcttgctgaatatggt 42469447  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 19788221 - 19788316
Alignment:
Q  13 aatatatgatgaagaatatattcttgctgaatatggtaaatcttgggaggttnnnnnnngctcgcaaacaacagcagccaaagaagaaccatggct 108  Q
    ||||||||||||||||||| ||||||||||||||||| |||||| |||||||       ||| |||||||||| || ||||||||| || ||||||    
T  19788221 aatatatgatgaagaatatgttcttgctgaatatggtgaatctttggaggttaaaagaagcttgcaaacaacaacatccaaagaaggactatggct 19788316  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 21767935 - 21767740
Alignment:
Q  13 aatatatgatgaagaatatattcttgctgaatatggtaaatcttgggaggttnnnnnnngctcgcaaacaacagcagccaaagaagaaccatggctagga 112  Q
    ||||||||| ||||||||| ||| ||||||||||||  |||||| |||||||        || |||||||| | || ||||| |  ||  ||||||||||    
T  21767935 aatatatgacgaagaatatcttcctgctgaatatggagaatctttggaggttaaaagaatcttgcaaacaaaaacaaccaaaaataaattatggctagga 21767836  T
Q  113 tatgatatctttcaaactctttgcacctctcaagacatggcttgtaacgacatcatcgataacacaagatgtgaaaacattgcatcaaactatata 208  Q
     |  || |||| ||  ||| ||||||||| |||||||||| |||||| | |||  || |||||| ||||||||||||  |||||||||||||||||    
T  21767835 cacaatttcttccacgctcattgcacctcacaagacatggtttgtaatgtcattgtcaataacaaaagatgtgaaaatgttgcatcaaactatata 21767740  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 3934065 - 3934101
Alignment:
Q  13 aatatatgatgaagaatatattcttgctgaatatggt 49  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3934065 aatatatgatgaagaatatgttcttgctgaatatggt 3934101  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 42679542 - 42679478
Alignment:
Q  144 aagacatggcttgtaacgacatcatcgataacacaagatgtgaaaacattgcatcaaactatata 208  Q
    ||||||||| || ||| | |||||||||||| | |||  |||||||| |||||||||||||||||    
T  42679542 aagacatggtttttaatgtcatcatcgataataaaagtggtgaaaacgttgcatcaaactatata 42679478  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 42679622 - 42679586
Alignment:
Q  13 aatatatgatgaagaatatattcttgctgaatatggt 49  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  42679622 aatatatgacgaagaatatgttcttgctgaatatggt 42679586  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 4878461 - 4878497
Alignment:
Q  13 aatatatgatgaagaatatattcttgctgaatatggt 49  Q
    ||||||||||||||||||| |||||||||||||||||    
T  4878461 aatatatgatgaagaatatgttcttgctgaatatggt 4878497  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 4532303 - 4532354
Alignment:
Q  13 aatatatgatgaagaatatattcttgctgaatatggtaaatcttgggaggtt 64  Q
    ||||||||| ||| ||||||||| ||||||||||||| |||||| |||||||    
T  4532303 aatatatgacgaaaaatatattcatgctgaatatggtgaatctttggaggtt 4532354  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 30780 - 30844
Alignment:
Q  144 aagacatggcttgtaacgacatcatcgataacacaagatgtgaaaacattgcatcaaactatata 208  Q
    ||||||||| |||||| |  ||| ||||||||| ||| ||||||||  |||||||||||||||||    
T  30780 aagacatggtttgtaatgctatcgtcgataacaaaagttgtgaaaattttgcatcaaactatata 30844  T

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