View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7670_high_11 (Length: 244)

Name: NF7670_high_11
Description: NF7670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7670_high_11
NF7670_high_11
[»] scaffold0053 (1 HSPs)
scaffold0053 (13-224)||(38136-38347)
[»] chr7 (17 HSPs)
chr7 (13-224)||(15355077-15355288)
chr7 (13-224)||(14931641-14931852)
chr7 (13-156)||(35970134-35970277)
chr7 (13-156)||(35991546-35991689)
chr7 (13-217)||(20590884-20591091)
chr7 (13-151)||(7233166-7233304)
chr7 (13-151)||(26505841-26505979)
chr7 (13-151)||(39203108-39203246)
chr7 (13-151)||(39214479-39214617)
chr7 (13-151)||(45729495-45729633)
chr7 (13-151)||(45740397-45740535)
chr7 (13-151)||(2112805-2112943)
chr7 (13-151)||(5121953-5122091)
chr7 (13-151)||(5156903-5157041)
chr7 (13-153)||(30306607-30306748)
chr7 (17-151)||(15602079-15602215)
chr7 (136-222)||(15601988-15602076)
[»] chr3 (20 HSPs)
chr3 (13-224)||(34802920-34803131)
chr3 (13-217)||(9528609-9528817)
chr3 (13-217)||(4682556-4682765)
chr3 (13-217)||(4692662-4692871)
chr3 (13-217)||(18001189-18001396)
chr3 (13-217)||(8228501-8228710)
chr3 (13-217)||(18044827-18045035)
chr3 (13-222)||(15659146-15659358)
chr3 (13-217)||(18060884-18061092)
chr3 (13-217)||(10412251-10412458)
chr3 (13-217)||(14453425-14453633)
chr3 (17-200)||(28011210-28011396)
chr3 (13-151)||(28358089-28358227)
chr3 (17-200)||(4447824-4448009)
chr3 (13-74)||(8344719-8344780)
chr3 (13-79)||(4621990-4622056)
chr3 (13-79)||(4632994-4633060)
chr3 (109-222)||(8344619-8344735)
chr3 (109-151)||(4621969-4622011)
chr3 (109-151)||(4632973-4633015)
[»] chr1 (5 HSPs)
chr1 (13-224)||(26796242-26796453)
chr1 (13-224)||(24652643-24652855)
chr1 (13-151)||(28148424-28148562)
chr1 (13-151)||(28158899-28159037)
chr1 (13-151)||(37886357-37886495)
[»] scaffold0070 (1 HSPs)
scaffold0070 (13-224)||(50724-50936)
[»] chr5 (9 HSPs)
chr5 (109-224)||(15494289-15494404)
chr5 (13-200)||(32451188-32451379)
chr5 (13-79)||(15494383-15494449)
chr5 (17-200)||(33771165-33771351)
chr5 (13-217)||(35398276-35398483)
chr5 (17-200)||(33786116-33786304)
chr5 (17-151)||(23734014-23734149)
chr5 (14-74)||(29883694-29883754)
chr5 (109-222)||(29883738-29883855)
[»] chr6 (19 HSPs)
chr6 (109-224)||(16560099-16560214)
chr6 (13-217)||(27033783-27033991)
chr6 (13-217)||(26982722-26982929)
chr6 (13-217)||(15431122-15431330)
chr6 (13-200)||(15403743-15403935)
chr6 (13-200)||(15415530-15415722)
chr6 (17-217)||(26993635-26993838)
chr6 (17-217)||(27027978-27028181)
chr6 (13-172)||(27644720-27644880)
chr6 (13-151)||(14136180-14136318)
chr6 (13-151)||(14148251-14148389)
chr6 (17-151)||(28158650-28158784)
chr6 (17-151)||(28169691-28169825)
chr6 (13-76)||(16560196-16560259)
chr6 (13-151)||(4218687-4218825)
chr6 (40-151)||(16744296-16744407)
chr6 (40-151)||(16762705-16762816)
chr6 (24-79)||(16744317-16744372)
chr6 (24-79)||(16762726-16762781)
[»] scaffold0089 (1 HSPs)
scaffold0089 (13-217)||(53436-53643)
[»] chr4 (7 HSPs)
chr4 (13-217)||(30276499-30276708)
chr4 (13-217)||(13439247-13439455)
chr4 (13-151)||(11925985-11926123)
chr4 (17-151)||(24811113-24811247)
chr4 (13-151)||(24583635-24583773)
chr4 (17-200)||(20307024-20307211)
chr4 (13-151)||(24598462-24598600)
[»] scaffold0355 (2 HSPs)
scaffold0355 (13-222)||(13544-13757)
scaffold0355 (13-222)||(15884-16097)
[»] scaffold0489 (1 HSPs)
scaffold0489 (17-151)||(3182-3316)
[»] chr8 (6 HSPs)
chr8 (13-151)||(3715917-3716055)
chr8 (13-151)||(15767305-15767443)
chr8 (13-151)||(15777718-15777856)
chr8 (13-151)||(40698522-40698660)
chr8 (13-222)||(14361251-14361464)
chr8 (17-151)||(31341290-31341425)
[»] chr2 (3 HSPs)
chr2 (17-200)||(23119655-23119840)
chr2 (13-142)||(12649236-12649366)
chr2 (13-142)||(12664157-12664287)


Alignment Details
Target: scaffold0053 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 38136 - 38347
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  38136 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgatgatcggagttggttttgagcagatctggttcg 38235  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtgtttgattctgttaggatgagagagaaaacgaaattct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38236 gatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtgtttgattctgttaggatgagagagaaaatgaaattct 38335  T
Q  213 gtttgtgagttg 224  Q
    ||||||||||||    
T  38336 gtttgtgagttg 38347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 15355077 - 15355288
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  15355077 tttggtgttgatgtgatgattcgaggtggttttgagtgaatccggttcggattcgttgatttggtgatgatcggagttggttttgagcagatctggttcg 15355176  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtgtttgattctgttaggatgagagagaaaacgaaattct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15355177 gatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtgtttgattctgttaggatgagagagaaaacgaaattct 15355276  T
Q  213 gtttgtgagttg 224  Q
    ||||||||||||    
T  15355277 gtttgtgagttg 15355288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 14931641 - 14931852
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  14931641 tttggtgttgatgtgatgattcgaggtggttttgagtgaatctggttcggattcgttgatttggtgatgatcggagttggttttgagcagatctggttcg 14931740  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtgtttgattctgttaggatgagagagaaaacgaaattct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14931741 gatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtgtttgattctgttaggatgagagagaaaacgaaattct 14931840  T
Q  213 gtttgtgagttg 224  Q
    ||||||||||||    
T  14931841 gtttgtgagttg 14931852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 35970277 - 35970134
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  35970277 tttggtgttgatgtgatgattcgaggtggttttgagtgaatccggttcggattcgttgatttggtgatgatcggagttggttttgagcagatctggttcg 35970178  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttcttccctc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35970177 gatctgttgatttggtgatgatttgttcttggtgttcttccctc 35970134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 35991689 - 35991546
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  35991689 tttggtgttgatgtgatgattcgaggtggttttgagtgaatccggttcggattcgttgatttggtgatgatcggagttggttttgagcagatctggttcg 35991590  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttcttccctc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35991589 gatctgttgatttggtgatgatttgttcttggtgttcttccctc 35991546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 20591091 - 20590884
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| ||  ||||||||| | ||      
T  20591091 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattccgagcagatccggttta 20590992  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttcc-ctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaaa 208  Q
    |||||||||| |||||||||||  |||||||||||||||||| || ||||||||| ||||| ||| ||||||||||||| |||||||||||| ||  | |    
T  20590991 gatctgttgattttggtgatgaggtgttcttggtgttcttcctcttttttctgagttttttctgt-tttgattctgttatggatgagagagagaaaaaga 20590893  T
Q  209 ttctgtttg 217  Q
    |||||||||    
T  20590892 ttctgtttg 20590884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 7233166 - 7233304
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  7233166 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 7233265  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  7233266 gatttgttgattttgtgaagatttgttcttggtgttctt 7233304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 26505841 - 26505979
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  26505841 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 26505940  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  26505941 gatttgttgattttgtgaagatttgttcttggtgttctt 26505979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 39203108 - 39203246
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  39203108 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 39203207  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  39203208 gatttgttgattttgtgaagatttgttcttggtgttctt 39203246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 39214479 - 39214617
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  39214479 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 39214578  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  39214579 gatttgttgattttgtgaagatttgttcttggtgttctt 39214617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 45729633 - 45729495
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  45729633 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 45729534  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  45729533 gatttgttgattttgtgaagatttgttcttggtgttctt 45729495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 45740535 - 45740397
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  45740535 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 45740436  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  45740435 gatttgttgattttgtgaagatttgttcttggtgttctt 45740397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 2112805 - 2112943
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  2112805 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 2112904  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||| ||||||||||||||    
T  2112905 gatttgttgattttgtgaagatttcttcttggtgttctt 2112943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 5122091 - 5121953
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| |||| |||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  5122091 tttggtgttggtgtggtgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 5121992  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  5121991 gatttgttgattttgtgaagatttgttcttggtgttctt 5121953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 5157041 - 5156903
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| |||| |||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  5157041 tttggtgttggtgtggtgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 5156942  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  5156941 gatttgttgattttgtgaagatttgttcttggtgttctt 5156903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 30306748 - 30306607
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||||| |||||||| |||  | | |||| || || |||||||||| | ||      
T  30306748 tttggtgttgatgtggtgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggagctgattctgagcagatccggttta 30306649  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttcc 153  Q
    |||||||||| |||||||||||  ||||||||||||||||||    
T  30306648 gatctgttgattttggtgatgaggtgttcttggtgttcttcc 30306607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 15602215 - 15602079
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggtttt-gagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggat 115  Q
    |||||||||||||| ||||  |||||||| |||||||||||||||||||| |||||||| |||  | | || | || ||| ||||||||| | || ||||    
T  15602215 gtgttgatgtgatgtttcgcggtggtttttgagtgaatccggttcggatttgttgattttgtggtggttggggctgttttggagcagatccggtttggat 15602116  T
Q  116 ctgttga-tttggtgatgatttgttcttggtgttctt 151  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  15602115 ctgttgattttggtgatgaattgttcttggtgttctt 15602079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 15602076 - 15601988
Alignment:
Q  136 tgttcttggtgttcttccctcttttctgagattttttgtg-tttgattctgtta-ggatgagagagaaaacgaaattctgtttgtgagt 222  Q
    ||||||||||||||||||   |||||| || |||||| || ||||||||||||| |||||||||||| ||  | |||||||||| ||||    
T  15602076 tgttcttggtgttcttcctctttttctcagcttttttctgttttgattctgttatggatgagagagagaaaaagattctgtttgagagt 15601988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 34802920 - 34803131
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  34802920 tttggtgttgatgtgatgattcgaggtggttttgagtgaatccggttcggattcgttgatttggtgatgatcggagttggttttgagcagatctggttcg 34803019  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtgtttgattctgttaggatgagagagaaaacgaaattct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34803020 gatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtgtttgattctgttaggatgagagagaaaacgaaattct 34803119  T
Q  213 gtttgtgagttg 224  Q
    ||||||||||||    
T  34803120 gtttgtgagttg 34803131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 9528817 - 9528609
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  9528817 tttggtgttgatgtgatgattcgaggtggttttgagtgaatccggttcggattcgttgatttggtgatgatcggagttggttttgagcagatctggttcg 9528718  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttcttccctc---ttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||| ||||||||||||| |||||||||||| ||  |     
T  9528717 gatctgttgatttggtgatgatttgttcttggtgttcttccctctttttttctgagatttttctgt-tttgattctgttatggatgagagagagaaaaag 9528619  T
Q  208 attctgtttg 217  Q
    ||||||||||    
T  9528618 attctgtttg 9528609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 4682765 - 4682556
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  4682765 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 4682666  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttc--cctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaa 207  Q
    |||||||||| |||||||||||| |||||||||||||||||  | | ||||||||||||||| ||| ||||||||||||| |||||||||||| ||  |     
T  4682665 gatctgttgattttggtgatgatgtgttcttggtgttcttcctctttttttctgagatttttctgtttttgattctgttatggatgagagagagaaaaag 4682566  T
Q  208 attctgtttg 217  Q
    ||||||||||    
T  4682565 attctgtttg 4682556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 4692871 - 4692662
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  4692871 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 4692772  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttc--cctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaa 207  Q
    |||||||||| |||||||||||| |||||||||||||||||  | | ||||||||||||||| ||| ||||||||||||| |||||||||||| ||  |     
T  4692771 gatctgttgattttggtgatgatgtgttcttggtgttcttcctctttttttctgagatttttctgtttttgattctgttatggatgagagagagaaaaag 4692672  T
Q  208 attctgtttg 217  Q
    ||||||||||    
T  4692671 attctgtttg 4692662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 18001396 - 18001189
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  18001396 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 18001297  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttcc-ctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaaa 208  Q
    |||||||||| |||||||||||| |||||||||||||||||| || |||| |||||||||| ||| ||||||||||||| |||||||||||| ||  | |    
T  18001296 gatctgttgattttggtgatgatgtgttcttggtgttcttcctcttttttttgagatttttctgt-tttgattctgttatggatgagagagagaaaaaga 18001198  T
Q  209 ttctgtttg 217  Q
    |||||||||    
T  18001197 ttctgtttg 18001189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 8228501 - 8228710
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  8228501 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 8228600  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttcc-ctcttttctgaga-ttttttgtg-tttgattctgtta-ggatgagagagaaaacgaa 207  Q
    |||||||||| |||||||||||| |||||||||||||||||| || |||||||| | |||||| || ||||||||||||| |||||||||||| ||  |     
T  8228601 gatctgttgattttggtgatgatgtgttcttggtgttcttcctcttttttctgaaatttttttctgttttgattctgttatggatgagagagagaaaaag 8228700  T
Q  208 attctgtttg 217  Q
    ||||||||||    
T  8228701 attctgtttg 8228710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 18045035 - 18044827
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  18045035 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 18044936  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttc--cctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaa 207  Q
    |||||||||| |||||||| ||| |||||||||||||||||  | | |||| |||||||||| ||| ||||||||||||| |||||||||||| ||  |     
T  18044935 gatctgttgattttggtgacgatgtgttcttggtgttcttcctctttttttttgagatttttctgt-tttgattctgttatggatgagagagagaaaaag 18044837  T
Q  208 attctgtttg 217  Q
    ||||||||||    
T  18044836 attctgtttg 18044827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 15659146 - 15659358
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||||| |||||||| |||  | | |||| || || |||||||||| | ||      
T  15659146 tttggtgttgatgtggtgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggagctgattctgagcagatccggttta 15659245  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtg-tttgattctgtta-ggatgagagagaaaacgaaat 209  Q
    |||||||||| |||||||||||  ||||||||||||||||||   ||||||||| |||||| || ||||||||||||| |||||||||||| ||  | ||    
T  15659246 gatctgttgattttggtgatgaggtgttcttggtgttcttcctctttttctgagtttttttctgttttgattctgttatggatgagagagagaaaaagat 15659345  T
Q  210 tctgtttgtgagt 222  Q
    |||||||| ||||    
T  15659346 tctgtttgagagt 15659358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 18061092 - 18060884
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||| ||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  18061092 tttggtattgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 18060993  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttc--cctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaa 207  Q
    |||||||||| |||||||| ||| |||||||||||||||||  | | |||| |||||||||| ||| ||||||||||||| |||||||||||| ||  |     
T  18060992 gatctgttgattttggtgacgatgtgttcttggtgttcttcctctttttttttgagatttttctgt-tttgattctgttatggatgagagagagaaaaag 18060894  T
Q  208 attctgtttg 217  Q
    ||||||||||    
T  18060893 attctgtttg 18060884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 10412458 - 10412251
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| ||| |||||||| |||  | | |||| || || |||||||||| | ||      
T  10412458 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcgaatttgttgattttgtggtggttggagctgattctgagcagatccggttta 10412359  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttcc-ctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaaa 208  Q
    |||||||||| |||||||||||  |||||||||||||||||| || ||||||||| ||||| ||| ||||||||||||| |||||||||||| ||  | |    
T  10412358 gatctgttgattttggtgatgaggtgttcttggtgttcttcctcttttttctgagttttttctgt-tttgattctgttatggatgagagagagaaaaaga 10412260  T
Q  209 ttctgtttg 217  Q
    |||||||||    
T  10412259 ttctgtttg 10412251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 14453425 - 14453633
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||||| |||||||| |||  | | |||| || || |||||||||| | ||      
T  14453425 tttggtgttgatgtggtgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggagctgattctgagcagatccggttta 14453524  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttccctcttttctgag-attttttgtg-tttgattctgtta-ggatgagagagaaaacgaaa 208  Q
    |||||||||| |||||||||||  ||||||||||||||||||   |||||||||  |||||| || ||||||||||||| |||||||||||| ||  | |    
T  14453525 gatctgttgattttggtgatgaggtgttcttggtgttcttcctctttttctgagttttttttctgttttgattctgttatggatgagagagagaaaaaga 14453624  T
Q  209 ttctgtttg 217  Q
    |||||||||    
T  14453625 ttctgtttg 14453633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 28011396 - 28011210
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatc 116  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||| |||  | | || | || ||| ||||||||| | || |||||    
T  28011396 gtgttgatgtgatgtttcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggggctgttttggagcagatccggtttggatc 28011297  T
Q  117 tgttga-tttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtg-tttgattctgtta-ggatgagagaga 200  Q
    |||||| |||||||||||  ||||||||||||||||||   |||||| || |||||| || ||||||||||||| ||||||||||||    
T  28011296 tgttgattttggtgatgaagtgttcttggtgttcttcctctttttctcagcttttttctgttttgattctgttatggatgagagaga 28011210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 28358227 - 28358089
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  28358227 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 28358128  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  28358127 gatttgttgattttgtgaagatttgttcttggtgttctt 28358089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 4448009 - 4447824
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatc 116  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||| |||  | | || | || ||| |||||||||   || |||||    
T  4448009 gtgttgatgtgatgtttcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggggctgttttggagcagatccagtttggatc 4447910  T
Q  117 tgttga-tttggtgatgatttgttcttggtgttcttccctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagaga 200  Q
    |||||| |||||||||||  ||||||||||||| ||||   |||||| || ||||| ||| ||||||||||||| ||||||||||||    
T  4447909 tgttgattttggtgatgaggtgttcttggtgttattcctctttttctcagttttttctgt-tttgattctgttatggatgagagaga 4447824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 8344780 - 8344719
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgattt 74  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  8344780 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattt 8344719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 4622056 - 4621990
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtga 79  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| ||||    
T  4622056 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtga 4621990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 4633060 - 4632994
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtga 79  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| ||||    
T  4633060 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtga 4632994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 8344735 - 8344619
Alignment:
Q  109 ttcggatctgttgattt-ggtgatgatttgttcttggtgttcttcc-ctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaac 204  Q
    ||||||| ||||||||| ||||||||  |||||||||||||||||| || ||||||||| ||||| ||| ||||||||||||| |||||||||||| ||     
T  8344735 ttcggatttgttgattttggtgatgaggtgttcttggtgttcttcctcttttttctgagttttttctgt-tttgattctgttatggatgagagagagaaa 8344637  T
Q  205 gaaattctgtttgtgagt 222  Q
     | |||||||||| ||||    
T  8344636 aagattctgtttgagagt 8344619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 4622011 - 4621969
Alignment:
Q  109 ttcggatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  4622011 ttcggatttgttgattttgtgatgatttgttcttggtgttctt 4621969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 4633015 - 4632973
Alignment:
Q  109 ttcggatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  4633015 ttcggatttgttgattttgtgatgatttgttcttggtgttctt 4632973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 26796453 - 26796242
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  26796453 tttggtgttgatgtgatgattcgaggtggttttgagtgaatccggttcggattcgttgatttggtgatgatcggagttggttttgagcagatctggttcg 26796354  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtgtttgattctgttaggatgagagagaaaacgaaattct 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26796353 gatctgttgattttgtgatgatttgttcttggtgttcttccctcttttctgagattttttgtgtttgattctgttaggatgagagagaaaacgaaattct 26796254  T
Q  213 gtttgtgagttg 224  Q
    ||||||||||||    
T  26796253 gtttgtgagttg 26796242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 24652855 - 24652643
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  24652855 tttggtgttgatgtgatgattcgaggtggttttgagtgaatccggttcggattcgttgatttggtgatgatcggagttggttttgagcagatctggttcg 24652756  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagatt-ttttgtgtttgattctgttaggatgagagagaaaacgaaattc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24652755 gatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagatttttttgtgtttgattctgttaggatgagagagaaaacgaaattc 24652656  T
Q  212 tgtttgtgagttg 224  Q
    |||||||||||||    
T  24652655 tgtttgtgagttg 24652643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 28148562 - 28148424
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  28148562 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 28148463  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  28148462 gatttgttgattttgtgaagatttgttcttggtgttctt 28148424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 28159037 - 28158899
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  28159037 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 28158938  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  28158937 gatttgttgattttgtgaagatttgttcttggtgttctt 28158899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 37886357 - 37886495
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  37886357 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 37886456  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  37886457 gatttgttgattttgtgaagatttgttcttggtgttctt 37886495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 50936 - 50724
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  50936 tttggtgttgatgtgatgattcgaggtggttttgagtgaatccggttcggattcgttgatttggtgatgatcggagttggttttgagcagatctggttcg 50837  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagatt-ttttgtgtttgattctgttaggatgagagagaaaacgaaattc 211  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  50836 gatctgttgatttggtgatgatttgtttttggtgttcttccctcttttctgagatttttttgtgtttgattttgttaggatgagagagaaaacgaaattc 50737  T
Q  212 tgtttgtgagttg 224  Q
    |||||||||||||    
T  50736 tgtttgtgagttg 50724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 15494404 - 15494289
Alignment:
Q  109 ttcggatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtgtttgattctgttaggatgagagagaaaacgaaa 208  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15494404 ttcggattcgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtgtttgattctattaggatgagagagaaaacgaaa 15494305  T
Q  209 ttctgtttgtgagttg 224  Q
    ||||||||||||||||    
T  15494304 ttctgtttgtgagttg 15494289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 32451188 - 32451379
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  32451188 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 32451287  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttc--cctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagaga 200  Q
    |||||||||| |||||||||||| |||||||||||||||||  | | ||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  32451288 gatctgttgattttggtgatgatgtgttcttggtgttcttcctctttttttctgagatttttctgt-tttgattctgttatggatgagagaga 32451379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 15494449 - 15494383
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtga 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15494449 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtga 15494383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 33771351 - 33771165
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatc 116  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||| |||  | | || | || ||| ||||||||| | || |||||    
T  33771351 gtgttgatgtgatgtttcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggggctgttttggagcagatccggtttggatc 33771252  T
Q  117 tgttga-tttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtg-tttgattctgtta-ggatgagagaga 200  Q
    |||||| |||||||||||  ||||||||||||||||||   |||||| || |||||| || ||||||||||||| ||||||||||||    
T  33771251 tgttgattttggtgatgaagtgttcttggtgttcttcctctttttctcagcttttttctgttttgattctgttatggatgagagaga 33771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 35398276 - 35398483
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||||| |||||||| |||  | | |||| || ||  ||||||||| | ||      
T  35398276 tttggtgttgatgtggtgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggagctgattccgagcagatccggttta 35398375  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttcc-ctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaaa 208  Q
    |||||||||| |||||||||||  |||||||||||||||||| || |||| |||| ||||| ||| ||||||||||||| |||||||||||| ||  | |    
T  35398376 gatctgttgattttggtgatgaggtgttcttggtgttcttcctcttttttatgagttttttctgt-tttgattctgttatggatgagagagagaaaaaga 35398474  T
Q  209 ttctgtttg 217  Q
    |||||||||    
T  35398475 ttctgtttg 35398483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 33786304 - 33786116
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatc 116  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||| |||  | | || | || ||| ||||||||| | || |||||    
T  33786304 gtgttgatgtgatgtttcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggggctgttttggagcagatccggtttggatc 33786205  T
Q  117 tgttga-tttggtgatgatttgttcttggtgttcttccctcttttctgagattttt---tgtgtttgattctgtta-ggatgagagaga 200  Q
    |||||| |||||||||||  ||||||||||||||||||   |||||| || |||||   ||| ||||||||||||| ||||||||||||    
T  33786204 tgttgattttggtgatgaagtgttcttggtgttcttcctctttttctcagctttttttctgtttttgattctgttatggatgagagaga 33786116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 23734014 - 23734149
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatc 116  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||| |||  | | || | || ||| ||||||||| | || |||||    
T  23734014 gtgttgatgtgatgtttcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggggctgttttggagcagatccggtttggatc 23734113  T
Q  117 tgttga-tttggtgatgatttgttcttggtgttctt 151  Q
    |||||| |||||||||||  ||||||||||||||||    
T  23734114 tgttgattttggtgatgaagtgttcttggtgttctt 23734149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 29883694 - 29883754
Alignment:
Q  14 ttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgattt 74  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||    
T  29883694 ttggtgttgatgtgatgatccgcggtggttttgagtgaatccggttcggatttgttgattt 29883754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 29883738 - 29883855
Alignment:
Q  109 ttcggatctgttgatttggtgatgatttgttcttggtgttcttcc-ctcttttctgag-attttttgtg-tttgattctgtta-ggatgagagagaaaac 204  Q
    ||||||| ||||||||| ||| |||  |||||||||||||||||| || ||| |||||  |||||| || ||||||||||||| |||||||||||| ||     
T  29883738 ttcggatttgttgattttgtggtgaggtgttcttggtgttcttcctctttttcctgagttttttttctgttttgattctgttatggatgagagagagaaa 29883837  T
Q  205 gaaattctgtttgtgagt 222  Q
     | |||||||||| ||||    
T  29883838 aagattctgtttgagagt 29883855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 16560214 - 16560099
Alignment:
Q  109 ttcggatctgttgatttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtgtttgattctgttaggatgagagagaaaacgaaa 208  Q
    |||||||  |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16560214 ttcggattcgttgatttggggatgatctgttcttggtgttcttccctcttttctgagattttttgtgtttgattctgttaggatgatagagaaaacgaaa 16560115  T
Q  209 ttctgtttgtgagttg 224  Q
    ||||||||||||||||    
T  16560114 ttctgtttgtgagttg 16560099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 27033991 - 27033783
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  27033991 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 27033892  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttcc-ctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaaa 208  Q
    |||||||||| |||||||||||| |||||||||||||||||| || ||||||||| ||||| ||| ||||||||||||| |||||||||||| ||  | |    
T  27033891 gatctgttgattttggtgatgatgtgttcttggtgttcttcctcttttttctgagttttttctgtttttgattctgttatggatgagagagagaaaaaga 27033792  T
Q  209 ttctgtttg 217  Q
    |||||||||    
T  27033791 ttctgtttg 27033783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 26982929 - 26982722
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  26982929 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 26982830  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttcc-ctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaaa 208  Q
    |||||||||| |||||||||||| |||||||||||||||||| || ||||||||| ||||| ||| ||||||||||||| |||||||||||| ||  | |    
T  26982829 gatctgttgattttggtgatgatgtgttcttggtgttcttcctcttttttctgagttttttctgt-tttgattctgttatggatgagagagagaaaaaga 26982731  T
Q  209 ttctgtttg 217  Q
    |||||||||    
T  26982730 ttctgtttg 26982722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 15431122 - 15431330
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  15431122 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 15431221  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttc--cctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaa 207  Q
    |||||||||| |||||||||||| |||||||||||||||||  | | ||||||||||||||| ||| ||||||||||||| |||||||||||| ||  |     
T  15431222 gatctgttgattttggtgatgatgtgttcttggtgttcttcctctttttttctgagatttttctgt-tttgattctgttatggatgagagagagaaaaag 15431320  T
Q  208 attctgtttg 217  Q
    ||||||||||    
T  15431321 attctgtttg 15431330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 15403743 - 15403935
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  15403743 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 15403842  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttcc---ctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagaga 200  Q
    |||||||||| |||||||||||| ||||||||||||||||||    | ||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  15403843 gatctgttgattttggtgatgatgtgttcttggtgttcttcctcttttttttctgagatttttctgt-tttgattctgttatggatgagagaga 15403935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 15415530 - 15415722
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  15415530 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 15415629  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttcc---ctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagaga 200  Q
    |||||||||| |||||||||||| ||||||||||||||||||    | ||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  15415630 gatctgttgattttggtgatgatgtgttcttggtgttcttcctcttttttttctgagatttttctgt-tttgattctgttatggatgagagaga 15415722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 26993838 - 26993635
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatc 116  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  | | |||| || || |||||||||| | ||  ||||    
T  26993838 gtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggagctgattctgagcagatccggtttagatc 26993739  T
Q  117 tgttga-tttggtgatgatttgttcttggtgttcttcc-ctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaaattct 212  Q
    |||||| |||||||||||  |||||||||||||||||| || ||||||||| ||||| ||| ||||||||||||| |||||||||||| ||  | |||||    
T  26993738 tgttgattttggtgatgaggtgttcttggtgttcttcctcttttttctgagttttttctgt-tttgattctgttatggatgagagagagaaaaagattct 26993640  T
Q  213 gtttg 217  Q
    |||||    
T  26993639 gtttg 26993635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 27028181 - 27027978
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatc 116  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  | | |||| || || |||||||||| | ||  ||||    
T  27028181 gtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggagctgattctgagcagatccggtttagatc 27028082  T
Q  117 tgttga-tttggtgatgatttgttcttggtgttcttcc-ctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaaattct 212  Q
    |||||| |||||||||||  |||||||||||||||||| || ||||||||| ||||| ||| ||||||||||||| |||||||||||| ||  | |||||    
T  27028081 tgttgattttggtgatgaggtgttcttggtgttcttcctcttttttctgagttttttctgt-tttgattctgttatggatgagagagagaaaaagattct 27027983  T
Q  213 gtttg 217  Q
    |||||    
T  27027982 gtttg 27027978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 27644880 - 27644720
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||||| |||||||| |||  | | |||| || ||||||||||||| ||||      
T  27644880 tttggtgttgatgtggtgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggagctgattttgagcagatccgattta 27644781  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttccctcttttctgagatttttt 172  Q
    |||||||||| |||||||||||  ||||||||||||||||||   ||||||||| ||||||    
T  27644780 gatctgttgattttggtgatgaggtgttcttggtgttcttcctctttttctgagttttttt 27644720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 14136180 - 14136318
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  14136180 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 14136279  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  14136280 gatttgttgattttgtgaagatttgttcttggtgttctt 14136318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 14148251 - 14148389
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  14148251 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 14148350  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  14148351 gatttgttgattttgtgaagatttgttcttggtgttctt 14148389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 28158784 - 28158650
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatc 116  Q
    |||||||||||||| ||||  ||||||| |||||||||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | |||||||     
T  28158784 gtgttgatgtgatgtttcgcggtggtttcgagtgaatccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcggatt 28158685  T
Q  117 tgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||||||||| |||| ||||||||||||||||||||    
T  28158684 tgttgattttgtgaagatttgttcttggtgttctt 28158650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 28169825 - 28169691
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatc 116  Q
    |||||||||||||| ||||  ||||||| |||||||||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | |||||||     
T  28169825 gtgttgatgtgatgtttcgcggtggtttcgagtgaatccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcggatt 28169726  T
Q  117 tgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||||||||| |||| ||||||||||||||||||||    
T  28169725 tgttgattttgtgaagatttgttcttggtgttctt 28169691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 16560259 - 16560196
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttgg 76  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16560259 tttggtgttgatgtgatgattcgaagtggttctgagtgaatccggttcggattcgttgatttgg 16560196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 4218687 - 4218825
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| |||| || ||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  4218687 tttggtgttggtgtggtggttcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 4218786  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  4218787 gatttgttgattttgtgaagatttgttcttggtgttctt 4218825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 16744407 - 16744296
Alignment:
Q  40 ggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatctgttgatttggtgatgatttgtt 139  Q
    |||||||| ||| |||| |||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||||| ||||||||| |||| ||||||||    
T  16744407 ggttttgaatgattccgtttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcggatttgttgattttgtgaagatttgtt 16744308  T
Q  140 cttggtgttctt 151  Q
    ||||||||||||    
T  16744307 cttggtgttctt 16744296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 16762816 - 16762705
Alignment:
Q  40 ggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatctgttgatttggtgatgatttgtt 139  Q
    |||||||| ||| |||| |||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||||| ||||||||| |||| ||||||||    
T  16762816 ggttttgaatgattccgtttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcggatttgttgattttgtgaagatttgtt 16762717  T
Q  140 cttggtgttctt 151  Q
    ||||||||||||    
T  16762716 cttggtgttctt 16762705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 16744372 - 16744317
Alignment:
Q  24 tgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtga 79  Q
    |||||||||| ||  ||||||||||||||||||||||||||| |||||||| ||||    
T  16744372 tgtgatgatttgagttggttttgagtgaatccggttcggatttgttgattttgtga 16744317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 16762781 - 16762726
Alignment:
Q  24 tgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtga 79  Q
    |||||||||| ||  ||||||||||||||||||||||||||| |||||||| ||||    
T  16762781 tgtgatgatttgagttggttttgagtgaatccggttcggatttgttgattttgtga 16762726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 53436 - 53643
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| ||   ||| ||||||| || |||||||||| | ||      
T  53436 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtagtgattggagttgattctgagcagatccggtttt 53535  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttcc-ctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaaa 208  Q
    |||||||||| |||||||||||| |||||||||||||||||| || ||||||||||||||| ||| ||||||||||||| |||||||||||| ||  | |    
T  53536 gatctgttgattttggtgatgatgtgttcttggtgttcttcctcttttttctgagatttttctgt-tttgattctgttatggatgagagagagaaaaaga 53634  T
Q  209 ttctgtttg 217  Q
    |||||||||    
T  53635 ttctgtttg 53643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 30276708 - 30276499
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  30276708 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 30276609  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttccctc---ttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacga 206  Q
    |||||||||| |||||||||||| |||||||||||||||||| ||   ||||||||||||||| ||| ||||||||||||| |||||||||||| ||  |    
T  30276608 gatctgttgattttggtgatgatgtgttcttggtgttcttccttctttttttctgagatttttctgt-tttgattctgttatggatgagagagagaaaaa 30276510  T
Q  207 aattctgtttg 217  Q
     ||||||||||    
T  30276509 gattctgtttg 30276499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 13439455 - 13439247
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| |||  ||| ||||||| || |||||||||| | ||      
T  13439455 tttggtgttgatgtgatgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtgattggagttgattctgagcagatccggttta 13439356  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttc--cctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagagaaaacgaa 207  Q
    |||||||||| |||||||||||| |||||||||||||||||  | | ||||||||||||||| ||| ||||||||||||| |||||||||||| ||  |     
T  13439355 gatctgttgattttggtgatgatgtgttcttggtgttcttcctctttttttctgagatttttctgt-tttgattctgttatggatgagagagagaaaaag 13439257  T
Q  208 attctgtttg 217  Q
    ||||||||||    
T  13439256 attctgtttg 13439247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 11926123 - 11925985
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  11926123 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 11926024  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  11926023 gatttgttgattttgtgaagatttgttcttggtgttctt 11925985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 24811113 - 24811247
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatc 116  Q
    |||||||||||||| ||||  ||||||| |||||||||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | |||||||     
T  24811113 gtgttgatgtgatgtttcgcggtggtttcgagtgaatccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcggatt 24811212  T
Q  117 tgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||||||||| |||| ||||||||||||||||||||    
T  24811213 tgttgattttgtgaagatttgttcttggtgttctt 24811247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 24583635 - 24583773
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| |||| |||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  24583635 tttggtgttggtgtggtgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 24583734  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  24583735 gatttgttgattttgtgaagatttgttcttggtgttctt 24583773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 20307211 - 20307024
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggtttt-gagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggat 115  Q
    |||||||||||||| ||||  |||||||| |||||||||||||||||||| |||||||| |||  | | || | || ||| ||||||||| | || ||||    
T  20307211 gtgttgatgtgatgtttcgcggtggtttttgagtgaatccggttcggatttgttgattttgtggtggttggggctgttttggagcagatccggtttggat 20307112  T
Q  116 ctgttga-tttggtgatgatttgttcttggtgttcttccctcttttctgagattttttgtg-tttgattctgtta-ggatgagagaga 200  Q
    ||||||| |||||||||||  ||||||||||||||||||   |||||| || |||||| || ||||||||||||| ||||||||||||    
T  20307111 ctgttgattttggtgatgaagtgttcttggtgttcttcctctttttctcagcttttttctgttttgattctgttatggatgagagaga 20307024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 24598462 - 24598600
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| |||| |||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | |||     
T  24598462 tttggtgttggtgtggtgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttca 24598561  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  24598562 gatttgttgattttgtgaagatttgttcttggtgttctt 24598600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 13757 - 13544
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||||||  ||||||| |||  ||| ||||||| || | |||||||| | ||      
T  13757 tttggtgttgatgtgatgattcgcggtggttttgagtgaatctggttcggatttcttgattttgtggtgattggagttgattctaagcagatccggttta 13658  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttcc-ctcttttctgagattttttgtg-tttgattctgtta-ggatgagagagaaaacgaaa 208  Q
    |||||||||| |||||||||||| ||||||||||||| |||| || |||| ||||||||||| || ||||||||||||| |||||||||||| ||  | |    
T  13657 gatctgttgattttggtgatgatgtgttcttggtgttgttcctcttttttttgagattttttctgttttgattctgttatggatgagagagagaaaaaga 13558  T
Q  209 ttctgtttgtgagt 222  Q
    ||||||||| ||||    
T  13557 ttctgtttgagagt 13544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 16097 - 15884
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||||||  ||||||| |||  ||| ||||||| || | |||||||| | ||      
T  16097 tttggtgttgatgtgatgattcgcggtggttttgagtgaatctggttcggatttcttgattttgtggtgattggagttgattctaagcagatccggttta 15998  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttcc-ctcttttctgagattttttgtg-tttgattctgtta-ggatgagagagaaaacgaaa 208  Q
    |||||||||| |||||||||||| ||||||||||||| |||| || |||| ||||||||||| || ||||||||||||| |||||||||||| ||  | |    
T  15997 gatctgttgattttggtgatgatgtgttcttggtgttgttcctcttttttttgagattttttctgttttgattctgttatggatgagagagagaaaaaga 15898  T
Q  209 ttctgtttgtgagt 222  Q
    ||||||||| ||||    
T  15897 ttctgtttgagagt 15884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 3182 - 3316
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatc 116  Q
    |||||||||||||| ||||  ||||||| |||||||||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | |||||||     
T  3182 gtgttgatgtgatgtttcgcggtggtttcgagtgaatccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcggatt 3281  T
Q  117 tgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||||||||| |||| ||||||||||||||||||||    
T  3282 tgttgattttgtgaagatttgttcttggtgttctt 3316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 3716055 - 3715917
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  3716055 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 3715956  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  3715955 gatttgttgattttgtgaagatttgttcttggtgttctt 3715917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 15767443 - 15767305
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  15767443 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 15767344  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  15767343 gatttgttgattttgtgaagatttgttcttggtgttctt 15767305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 15777856 - 15777718
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  15777856 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 15777757  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  15777756 gatttgttgattttgtgaagatttgttcttggtgttctt 15777718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 40698660 - 40698522
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||| ||||||||||||  |||||||||| ||| ||||||||||||| |||||||| |||| |||  ||||||||||||||   ||| | ||||    
T  40698660 tttggtgttggtgtgatgattcgcggtggttttgaatgattccggttcggatttgttgattttgtgatgatttgagttggttttgagtgaatccggttcg 40698561  T
Q  113 gatctgttgatttggtgatgatttgttcttggtgttctt 151  Q
    ||| ||||||||| |||| ||||||||||||||||||||    
T  40698560 gatttgttgattttgtgaagatttgttcttggtgttctt 40698522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 14361251 - 14361464
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    ||||||||| ||||| |||||||  |||||||||||||||||||||||||||| |||||||| |||  | | |||| || || |||||||||| | ||      
T  14361251 tttggtgtttatgtggtgattcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggagctgattctgagcagatccggttta 14361350  T
Q  113 gatctgttga-tttggtgatgatttgttcttggtgttcttccctcttttctgag-attttttgtg-tttgattctgtta-ggatgagagagaaaacgaaa 208  Q
    |||||||||| |||||||||||  ||||||||||||||||||   |||||||||  |||||| || ||||||||||||| |||||||||||| ||  | |    
T  14361351 gatctgttgattttggtgatgaggtgttcttggtgttcttcctctttttctgagttttttttctgttttgattctgttatggatgagagagagaaaaaga 14361450  T
Q  209 ttctgtttgtgagt 222  Q
    ||||||||| ||||    
T  14361451 ttctgtttgagagt 14361464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 31341290 - 31341425
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatc 116  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||| |||  | | || | || ||| ||||||| | | || |||||    
T  31341290 gtgttgatgtgatgtttcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggggctgttttggagcagacccggtttggatc 31341389  T
Q  117 tgttga-tttggtgatgatttgttcttggtgttctt 151  Q
    |||||| |||||||||||  ||||||||||||||||    
T  31341390 tgttgattttggtgatgaagtgttcttggtgttctt 31341425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 23119840 - 23119655
Alignment:
Q  17 gtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcggatc 116  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||| |||  | | || | || ||| ||||||||| | || |||||    
T  23119840 gtgttgatgtgatgtttcgcggtggttttgagtgaatccggttcggatttgttgattttgtggtggttggggctgttttggagcagatccggtttggatc 23119741  T
Q  117 tgttga-tttggtgatgatttgttcttggtgttcttccctcttttctgagattttt-tgtgtttgattctgtta-ggatgagagaga 200  Q
    |||||| |||||||||||  ||||||||||||||||||   |||||| || ||||| ||| ||||||||||||| ||||||||||||    
T  23119740 tgttgattttggtgatgaagtgttcttggtgttcttcctctttttctcagctttttctgt-tttgattctgttatggatgagagaga 23119655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 12649366 - 12649236
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||||||| ||||| || |||  ||| ||||||| || |||||||||| | ||      
T  12649366 tttggtgttgatgtgatgattcgcggtggttttgagagaatccggttcggatttgttgaatttgtggtgattggagttgattctgagcagatccggttta 12649267  T
Q  113 gatctgttga-tttggtgatgatttgttctt 142  Q
    |||||||||| |||||||||||| |||||||    
T  12649266 gatctgttgattttggtgatgatgtgttctt 12649236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 12664287 - 12664157
Alignment:
Q  13 tttggtgttgatgtgatgattcgaagtggttttgagtgaatccggttcggattcgttgatttggtgacgatcggagttggttttgagcagatctgattcg 112  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||| ||||| ||||| || |||  ||| ||||||| || |||||||||| | ||      
T  12664287 tttggtgttgatgtgatgattcgcggtggttttgagagaatccggtttggatttgttgaatttgtggtgattggagttgattctgagcagatccggttta 12664188  T
Q  113 gatctgttga-tttggtgatgatttgttctt 142  Q
    |||||||||| |||||||||||| |||||||    
T  12664187 gatctgttgattttggtgatgatgtgttctt 12664157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University