View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7670_high_13 (Length: 239)
Name: NF7670_high_13
Description: NF7670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7670_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5358062 - 5357844
Alignment:
| Q |
1 |
cgcgattagctaatttctcttctattagagatgagaagagatataaatggcaattattgtattatgattttctctctgaatgagtttattaaattattac |
100 |
Q |
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| T |
5358062 |
cgcgattagctaatttctcttctattagagatgagaagagaaataaatggcaattattgtattatgattttctctctgaatgagtttattaaattattac |
5357963 |
T |
|
| Q |
101 |
ttttcatctatgtgtgtaaagtttattacccttcgactttatgaatgcttgagatatatgagattcacacatttgtagtctaagaatatatgcacattct |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5357962 |
ttttcatc--tgtgtgtaaagtttattacccttcgactttatgaatgcttgag--atatgagattcacacatttgtagtctaagaatatatgcacattct |
5357867 |
T |
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| Q |
201 |
cttgtagttgctagtgaggtttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
5357866 |
cttgtagttgctagtgaggtttt |
5357844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 5372688 - 5372577
Alignment:
| Q |
108 |
ctatgtgtgtaaagtttattacccttcgactttatgaatgcttgagatatatgagattcacacatttgtagtctaagaatatatgcacattctcttgtag |
207 |
Q |
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|||| |||| ||||||| || |||| |||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5372688 |
ctatatgtgcaaagttttctatcctttgactttatgaatgcttaagata----agattcacacatttgtagtctaagtatatatgcacattctcttgtaa |
5372593 |
T |
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| Q |
208 |
ttgctagtgaggtttt |
223 |
Q |
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||||| |||||||||| |
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| T |
5372592 |
ttgctggtgaggtttt |
5372577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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