View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7670_high_14 (Length: 238)
Name: NF7670_high_14
Description: NF7670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7670_high_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 33246859 - 33246702
Alignment:
| Q |
80 |
ttatagagattgtttatagaaatacgtttgaaagttgaaaagtgtttttactttatgttagtctgcatttgcattcctttgcagttgtatagtgtttaat |
179 |
Q |
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| T |
33246859 |
ttatggagattgtttatagagatatgtttgaaagttgaaaagtgtctttactttatgttagtctgcatttgcattcatttccggttgtatagtgcttaat |
33246760 |
T |
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| Q |
180 |
ttactgagnnnnnnnttagcttttaagtctcacttatcatcaagcattaaatgcaaagc |
238 |
Q |
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| T |
33246759 |
ttactga-aaaacaaatagcttttaagtctcacttatcatcaagcattaaatgcaaagc |
33246702 |
T |
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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 20643483 - 20643402
Alignment:
| Q |
80 |
ttatagagattgtttatagaaatacgtttgaaagttgaaaagtgtttttactttatgttagtctgcatttgcattcctttgc |
161 |
Q |
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| T |
20643483 |
ttatggagattgtttatagagatatgtttgaaagttgaaaagtgtttttactttatgttagtctgcatttgcattcctttgc |
20643402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 20643392 - 20643350
Alignment:
| Q |
196 |
tagcttttaagtctcacttatcatcaagcattaaatgcaaagc |
238 |
Q |
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| T |
20643392 |
tagcttttaagtctcacttatcatcaagcattaaatgcaaagc |
20643350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 29373125 - 29373174
Alignment:
| Q |
111 |
aagttgaaaagtgtttt-tactttatgttagtctgcatttgcattccttt |
159 |
Q |
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| T |
29373125 |
aagttgaaaagtgttttttactttatgttaggctgcatttgcattccttt |
29373174 |
T |
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