View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7670_low_1 (Length: 927)
Name: NF7670_low_1
Description: NF7670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7670_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 733; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 12 - 909
Target Start/End: Original strand, 15522255 - 15523154
Alignment:
| Q |
12 |
tggtgttggaggataggttttgtggaataatttaattagcactagaaatggtgtaggtgtgggtgtaggaaggtggtttgatgataactgtaggtcagag |
111 |
Q |
| |
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||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15522255 |
tggtggtggaggataggttcggtgggataatttaattagcactagaaatggtgtcggtgtgggtgtaggaaggtggtttgatgataaatgtaggtcagag |
15522354 |
T |
|
| Q |
112 |
gtgagagtgggtgtttcaaccttattttggtgggatcagtggctacacaaaggggtgtttaaggatat--ttagttgcctttttaatctttgtgataata |
209 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
15522355 |
gtgagagccggtgtttcaaccttattttggtgggatcagttgctacacaaaggggtgtttaaggatatatttagttgc-tttttaatctttgtgataata |
15522453 |
T |
|
| Q |
210 |
aattggcacgatggctgagatgaagcagttagtgtggcgtgagggtggtaaggcttggta-tggaggaggagattgtgtgcatgggaggacgatctgttg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |
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| T |
15522454 |
aattggcacgatggctgagatgaagcagttagtgtggcgtgagggtggtaaggcttggaaatggaggaggagattgtgggcatgggaggacgatctgttg |
15522553 |
T |
|
| Q |
309 |
ggagagggccattccttgttgaattctgctcatttgcataaaagtatgaatgataggttgctttggtatttgcatgctacnnnnnnntataatgttagtg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15522554 |
ggagagggccattccttgttgaattctgctcatttgcataaaagtatgaatgataggttgctttggtatttgcatgctacaaaaaaatataatgttagta |
15522653 |
T |
|
| Q |
409 |
gtgcctggaattttctaacattaacggatcaacaaattattgatgaaaaggctccattaatttggcataaggattttcctctcaaagtttgtctcttcgt |
508 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15522654 |
gtgcgtggaattttctaacattaacggatcagcaaattattgatgaaaaggctccattaatttggcataaggattttcctctcaaagtttgtctcttcgt |
15522753 |
T |
|
| Q |
509 |
acgaaggttactccgtaatcgtatttcgaaaaatggcaaccttattaggcgagttgagctcacggttattgatcagctttgtgttggagggtgtggtaaa |
608 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
15522754 |
gcggcggttactccgtaatcgtattccgaaaaatggcaaccttattaggcgaggtgagctcacggttattgatcagctttatgttggagggtgtggtaaa |
15522853 |
T |
|
| Q |
609 |
tcagaagacgtagatcatcttttccttcattgtgatttttatcgtcaaatttggaatgttgtttacaactggttcgactttatcttggttaatctgtctc |
708 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
15522854 |
tcagaagacgtagatcatcttttccttcattgtgatttttatcgtcaaatttggaatgttgtttacaactggttcgactttatcttggttaatttgtctc |
15522953 |
T |
|
| Q |
709 |
atatttcatatcatttgattcattttgttgccttgggaggctattctaaaaagttacgcgctattcttaaattggtttggttcttgattgtttgtgttat |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
15522954 |
gtatttcatatcatttgattcattttgttgccttgggaggctattctaaaaagttacgcgctgttcttaaattggtttggttcttgattgtttgcattat |
15523053 |
T |
|
| Q |
809 |
ctagcaataaagaaatacttgtatttttcagcaaaaagaggatgtgcttcatctcttactcgacaaaattaaagttcaatcttttcagtggctgaagatg |
908 |
Q |
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||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
15523054 |
ctagcgagaaagaaatacttgtatttttaagcaaaaagaggatgtgcttcatctcttactcgacaaaattaaaattcaatcttttcggtggctgaagatg |
15523153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 2e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 539 - 792
Target Start/End: Complemental strand, 33445413 - 33445159
Alignment:
| Q |
539 |
aaatggcaaccttattaggcgagttgagctcacggttattgatcagctttgtgttggagggtgtggtaaatcagaagacgtagatcatcttttc-cttca |
637 |
Q |
| |
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||||| ||||||||||||||||| || |||||| |||||||||| |||||||||||||||| || ||| | || || ||||||||| |||| ||||| |
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| T |
33445413 |
aaatgacaaccttattaggcgaggtgtgctcacaattattgatcaactttgtgttggagggtttgataatttagtggatgtagatcatattttttcttca |
33445314 |
T |
|
| Q |
638 |
ttgtgatttttatcgtcaaatttggaatgttgtttacaactggttcgactttatcttggttaatctgtctcatatttcatatcatttgattcattttgtt |
737 |
Q |
| |
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||||||||||| | |||||||| | |||||||||||| |||||||| ||||||||||||| | || ||||||| ||| | |||||||||||||||||||| |
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| T |
33445313 |
ttgtgatttttcttgtcaaattcgaaatgttgtttacgactggttcaactttatcttggtcattccgtctcattttttagatcatttgattcattttgtt |
33445214 |
T |
|
| Q |
738 |
gccttgggaggctattctaaaaagttacgcgctattcttaaattggtttggttct |
792 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||| ||||| ||||||||| |
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|
| T |
33445213 |
gccttgggaggctattctaaaaatttacacgtggttcttcaattgttttggttct |
33445159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 33445951 - 33445835
Alignment:
| Q |
33 |
gtggaataatttaattagcactagaaatggtgtaggtgtgggtgtaggaaggtggtttgatgataactgtaggtcagaggtgagagtgggtgtttcaacc |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||| ||| |||||| ||| | |||||||| |
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|
| T |
33445951 |
gtggaataatttaattagcactagaaatggtgtcggtgtgggggtaggaaagtggtttgatgacaactgtgggtgtgaggtgtgagacgcagtttcaaca |
33445852 |
T |
|
| Q |
133 |
ttattttggtgggatca |
149 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
33445851 |
ttatttttgtgggatca |
33445835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 417 - 508
Target Start/End: Complemental strand, 33445555 - 33445464
Alignment:
| Q |
417 |
aattttctaacattaacggatcaacaaattattgatgaaaaggctccattaatttggcataaggattttcctctcaaagtttgtctcttcgt |
508 |
Q |
| |
|
|||||||||| || ||||||| | ||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
33445555 |
aattttctaatatcaacggattatcaaattattgatgaatatgctccattaatttggcataaggaggttcctctgaaagtttgtctcttcgt |
33445464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 609 - 905
Target Start/End: Complemental strand, 24758776 - 24758481
Alignment:
| Q |
609 |
tcagaagacgtagatcatcttttccttcattgtgatttttatcgtcaaatttggaatgttgtttacaactggttcgactttatcttggttaatctgtctc |
708 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||||||||||| ||| ||||||||| ||| | |||||| ||||| | ||| ||||||||| ||| ||||| |
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|
| T |
24758776 |
tcagaggacgttgatcacctttttcttcattgtgatttttttcgacaaatttgg-atgctcattacaattggttaggcttcatcttggtttatccgtctc |
24758678 |
T |
|
| Q |
709 |
atatttcatatcatttgattcattttgttgccttgggaggctattctaaaaagttacgcgctattcttaaattggtttggttcttgattgtttgtgttat |
808 |
Q |
| |
|
||||||| ||||| ||| |||| |||| || ||||||||| ||| ||||||||| | || | ||| | ||||||||||| | |||| |||| || || |
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|
| T |
24758677 |
atatttcggatcatctgactcatattgtggctctgggaggctcttcaaaaaagttatgagcggtacttgatttggtttggttttcgattttttgggtcat |
24758578 |
T |
|
| Q |
809 |
ctagcaataaagaaatacttgtatttttcagcaaaaagaggatgtgcttcatctcttactcgacaaaattaaagttcaatcttttcagtggctgaag |
905 |
Q |
| |
|
|| || ||| |||| | |||||||| | ||||| | ||| | ||||||| | | || || ||||||||| ||||||||||| |||||||||| |
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|
| T |
24758577 |
ctgacaggaaataaatgcatgtattttctaacaaaatcaagatatacttcatcaccttcttgataaaattaaatttcaatcttttttgtggctgaag |
24758481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 575 - 893
Target Start/End: Complemental strand, 38758467 - 38758149
Alignment:
| Q |
575 |
tattgatcagctttgtgttggagggtgtggtaaatcagaagacgtagatcatcttttccttcattgtgatttttatcgtcaaatttggaatgttgtttac |
674 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||| |||| |||||| || | |||| |||||||||||||||| | | |||||||||||||||||||| |
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|
| T |
38758467 |
tattgatcggctttatgtaggagggtgtggtaatacagaggacgtaaataacttttttcttcattgtgattttttttggcaaatttggaatgttgtttat |
38758368 |
T |
|
| Q |
675 |
aactggttcgactttatcttggttaatctgtctcatatttcatatcatttgattcattttgttgccttgggaggctattctaaaaagttacgcgctattc |
774 |
Q |
| |
|
|| ||||| | ||| |||||||| ||| |||||||||||| | ||||| ||||||||||| || || |||| || ||| ||||||||| || | |||| |
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|
| T |
38758367 |
aattggttaggcttcatcttggtcaatttgtctcatattttggaccatttaattcattttgtggctttaggagactcttcaaaaaagttatgcacgattc |
38758268 |
T |
|
| Q |
775 |
ttaaattggtttggttcttgattgtttgtgttatctagcaataaagaaatacttgtatttttcagcaaaaagaggatgtgcttcatctcttactcgacaa |
874 |
Q |
| |
|
|| | |||||| ||| | || |||||| || |||| ||| |||||||| || | ||||| |||||||| |||| || ||||||| | | || ||||| |
|
|
| T |
38758267 |
ttcatctggtttagttttcgactgtttgggtcatctgacaagaaagaaatgctcgcattttccagcaaaatcaggacgttcttcatcaccttcttgacaa |
38758168 |
T |
|
| Q |
875 |
aattaaagttcaatctttt |
893 |
Q |
| |
|
||||||| ||||||||||| |
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|
| T |
38758167 |
aattaaaattcaatctttt |
38758149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 622 - 769
Target Start/End: Complemental strand, 17212581 - 17212434
Alignment:
| Q |
622 |
atcatcttttccttcattgtgatttttatcgtcaaatttggaatgttgtttacaactggttcgactttatcttggttaatctgtctcatatttcatatca |
721 |
Q |
| |
|
|||||||||| ||||| | |||||||||| | |||||||||||||||||||| |||||||| | ||| ||| |||| ||| || |||||||| ||| |
|
|
| T |
17212581 |
atcatctttttcttcaatatgatttttattgacaaatttggaatgttgtttataactggttagtcttcatcatggtcaattagtttcatattttggatcc |
17212482 |
T |
|
| Q |
722 |
tttgattcattttgttgccttgggaggctattctaaaaagttacgcgc |
769 |
Q |
| |
|
||| ||||||||||||| ||||||| ||| ||||||||||||| |||| |
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|
| T |
17212481 |
tttaattcattttgttgtcttgggaagcttttctaaaaagttatgcgc |
17212434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 17213176 - 17213109
Alignment:
| Q |
33 |
gtggaataatttaattagcactagaaatggtgtaggtgtgggtgtaggaaggtggtttgatgataact |
100 |
Q |
| |
|
||||||| ||||||||| | |||||||||||| || ||||||||| ||| |||| |||||||||||| |
|
|
| T |
17213176 |
gtggaatgatttaattaatattagaaatggtgtcggagtgggtgtaagaatgtggattgatgataact |
17213109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 7114535 - 7114463
Alignment:
| Q |
28 |
gttttgtggaataatttaattagcactagaaatggtgtaggtgtgggtgtaggaaggtggtttgatgataact |
100 |
Q |
| |
|
|||| |||||||||| ||||||| | |||| |||||||||| ||||| |||||||||||| |||| ||||||| |
|
|
| T |
7114535 |
gtttggtggaataatataattagtattagacatggtgtaggcgtgggagtaggaaggtggattgacgataact |
7114463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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