View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7670_low_10 (Length: 250)
Name: NF7670_low_10
Description: NF7670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7670_low_10 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 5358642 - 5358402
Alignment:
| Q |
10 |
aagaatatgcagggttgaagaaaaaacacagtgaaggatacacaagttttttctaaatatatcggaatcaagagagtcctcaaagtatcgatgcattata |
109 |
Q |
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| T |
5358642 |
aagaaaatgcaaggttgcagaaaaaacacagtgagggatacgcaagttttttctaaatatattggaatcaagagagtcctcaaagtatcgatgcattata |
5358543 |
T |
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| Q |
110 |
acaaaaacatacatatgcaatttgaggcattgcatttgtgatctggttgacgggaaaatgtaatgctttatattggaatcacactgttatgtacaatgac |
209 |
Q |
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| T |
5358542 |
acaaaaacatacatatgcaatttgaggcattgcatttgtgatctggttgacgggaaaatgtaatgctttatattggaatcacactgttatgtacaatgac |
5358443 |
T |
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| Q |
210 |
ttattcggatagtgatatgatcaataatgctagcaacatac |
250 |
Q |
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| T |
5358442 |
ttattcggatagtgaaatgatcaataatgctagaaacatac |
5358402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 145744 - 145831
Alignment:
| Q |
125 |
tgcaatttgaggcattgcattt-gtgatctggttgacgggaaaatgtaatgctttatattggaatcacactgttatgtacaatgactt |
211 |
Q |
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| T |
145744 |
tgcaacttgaggcattgtattttgcgatctggttgctgggaaaatgtaacgctttatattggaatcacagtgttgtgtacaatgactt |
145831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 1206510 - 1206600
Alignment:
| Q |
22 |
ggttgaagaaaaaacacagtgaaggatacacaagttttttctaaatatatcggaatcaagagagtcctcaaagtatcgatgcattataacaa |
113 |
Q |
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| T |
1206510 |
ggttgcagaaaaaacatggtgaaggatacaaaagtttttccaagat-tattggaatcaagagagtcctcaaagtttcaatgcgtcataacaa |
1206600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 147818 - 147897
Alignment:
| Q |
21 |
gggttgaagaaaaaacacagtgaaggatacacaagttttttctaaatatatcggaatcaagagagtcctcaaagtatcgat |
101 |
Q |
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| T |
147818 |
gggttgcagaaaaaacatggtgaaggatacaaaagttatt-caaagaatattgaaatcaagagagtcctcaaagtttcgat |
147897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 43872433 - 43872387
Alignment:
| Q |
73 |
ggaatcaagagagtcctcaaagtatcgatgcattataacaaaaacat |
119 |
Q |
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| T |
43872433 |
ggaatcaagagagtcctcaaagtattgatgcattataacaagaacat |
43872387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 43862303 - 43862258
Alignment:
| Q |
73 |
ggaatcaagagagtcctcaaagtatcgatgcattataacaaaaaca |
118 |
Q |
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| T |
43862303 |
ggaatcaggagagtcctcaaagtattgatccattataacaagaaca |
43862258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 43865824 - 43865779
Alignment:
| Q |
73 |
ggaatcaagagagtcctcaaagtatcgatgcattataacaaaaaca |
118 |
Q |
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| T |
43865824 |
ggaatccagagagtcgtcaaagtatggatgcattataacaagaaca |
43865779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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