View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7670_low_13 (Length: 241)
Name: NF7670_low_13
Description: NF7670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7670_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 24189014 - 24188805
Alignment:
| Q |
12 |
gaagaatatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaacagttggagtaaagagacggaaccaaaggttg |
111 |
Q |
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| T |
24189014 |
gaagaaaatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaacagttggagtaaagagacggaaccaaaggttg |
24188915 |
T |
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| Q |
112 |
ttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaagaagttaaagagacggcggttga |
211 |
Q |
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| T |
24188914 |
ttttcggagttaacggtgacgtctttagtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaagaagttaaagagacggcgattga |
24188815 |
T |
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| Q |
212 |
cggtaccgtt |
221 |
Q |
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|||| ||||| |
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| T |
24188814 |
cggtgccgtt |
24188805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 24179208 - 24178997
Alignment:
| Q |
12 |
gaagaatatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaacagttggagtaaagagacggaaccaaaggttg |
111 |
Q |
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|||||| |||||||| ||||||||||| | |||||||| |||||||||| |||||||||||||||||||||| || ||||||||||| ||||||| ||| |
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| T |
24179208 |
gaagaaaatgacgacaggaagggaggttgctttggtggcaccaccatctccggtgacttctccggcaacagtgggggtaaagagacgaaaccaaacgtta |
24179109 |
T |
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| Q |
112 |
ttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaagaagttaaagagacggcggttga |
211 |
Q |
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| T |
24179108 |
ttttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagtggcgttaggtgaggatttgagatcgaagaagttaaagagacggcggttga |
24179009 |
T |
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| Q |
212 |
cggtaccgttag |
223 |
Q |
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|||||||||||| |
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| T |
24179008 |
cggtaccgttag |
24178997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 24168772 - 24168573
Alignment:
| Q |
12 |
gaagaatatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaacagttggagtaaagagacggaaccaaaggttg |
111 |
Q |
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|||||| ||||| |||||||||||||| |||||||| | |||||||||| || |||||||||| ||||||| || ||||||||||||||||||| ||| |
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| T |
24168772 |
gaagaaaatgacaacgggaagggaggttgttttggttgcaccaccatctccgacgacttctccgccaacagtgggtgtaaagagacggaaccaaacgtta |
24168673 |
T |
|
| Q |
112 |
ttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaagaagttaaagagacggcggttga |
211 |
Q |
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||||||||||||||||||| |||||| ||||||| ||||||| |||||||| ||||| ||||||||| | |||||||||||||||||||||||||| |
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| T |
24168672 |
ttttcggagttaacggtaatgtctttgatggaaacaccgttaacgggagtggcattaggcgaggatttgcggatgaagaagttaaagagacggcggttga |
24168573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 67 - 223
Target Start/End: Complemental strand, 24151878 - 24151722
Alignment:
| Q |
67 |
acttctccggcaacagttggagtaaagagacggaaccaaaggttgttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgt |
166 |
Q |
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||||||||||| || || ||||| |||||||| ||||||| ||| ||||||| ||||||||||| |||||| |||||||||||||||| ||||||| || |
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| T |
24151878 |
acttctccggcgacggtgggagtgaagagacgaaaccaaacgttattttcggtgttaacggtaatgtctttggtggaaacgccgttaacgggagtggagt |
24151779 |
T |
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| Q |
167 |
taggtgaggatttgagatcgaagaagttaaagagacggcggttgacggtaccgttag |
223 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
24151778 |
taggtgaggcattgagactgaagaagttaaagagacggcggttgacggtgccgttag |
24151722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 24112575 - 24112443
Alignment:
| Q |
91 |
aagagacggaaccaaaggttgttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaaga |
190 |
Q |
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|||||||||||||||| ||| | ||| | ||||||| |||||||||| |||||||||||||||| || |||||||||| || |||||| |||| |||| |
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| T |
24112575 |
aagagacggaaccaaacgttatcttctgcgttaacgataacgtctttggtggaaacgccgttaacagggatggcgttaggggaagatttgcgatctaaga |
24112476 |
T |
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| Q |
191 |
agttaaagagacggcggttgacggtaccgttag |
223 |
Q |
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| T |
24112475 |
aattaagaaaacggcggttaacggtgccgttag |
24112443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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