View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7670_low_16 (Length: 229)
Name: NF7670_low_16
Description: NF7670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7670_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 52815220 - 52815432
Alignment:
| Q |
16 |
gatacaagacaagataattcatgtggcaaaaatactcacaatataaacaacaggcattcaaagagcacataagaaataaacgatataatcaacggtcaac |
115 |
Q |
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| T |
52815220 |
gatacaagacaagataatt-atgtggcaaaaatactcacaatataaacaacaggcatacgaagagcacataagaaataaacgatataatcaacggtcaac |
52815318 |
T |
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| Q |
116 |
acacgttaatattatcctcacatatcatgtatatattttgaatggcgcagatagtgtcaaaatttcaaaacataatcctgaacaaagtacgttatgaatg |
215 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52815319 |
acacgttaatattatcctcacaaatcatgtatatattttgaatggcgcagatagtgtcaaaatttgaaaacataatcctgaacaaagtacgttatgaatg |
52815418 |
T |
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| Q |
216 |
cttctgagtatcag |
229 |
Q |
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||||||||||||| |
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| T |
52815419 |
attctgagtatcag |
52815432 |
T |
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