View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7670_low_2 (Length: 676)

Name: NF7670_low_2
Description: NF7670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7670_low_2
NF7670_low_2
[»] chr3 (9 HSPs)
chr3 (1-669)||(2821208-2821875)
chr3 (117-327)||(2834828-2835031)
chr3 (2-95)||(2809970-2810063)
chr3 (529-614)||(48196786-48196871)
chr3 (151-290)||(2771858-2771991)
chr3 (4-103)||(2800402-2800501)
chr3 (69-103)||(2771782-2771816)
chr3 (556-646)||(46574483-46574573)
chr3 (9-86)||(2835080-2835157)
[»] chr1 (4 HSPs)
chr1 (529-614)||(23539739-23539823)
chr1 (1-103)||(11114761-11114863)
chr1 (484-613)||(40569674-40569804)
chr1 (237-288)||(11114579-11114630)
[»] chr5 (2 HSPs)
chr5 (529-614)||(16397967-16398052)
chr5 (375-489)||(7379937-7380048)
[»] chr8 (1 HSPs)
chr8 (569-647)||(10723775-10723853)
[»] chr2 (1 HSPs)
chr2 (385-489)||(15999232-15999333)
[»] scaffold0018 (1 HSPs)
scaffold0018 (487-584)||(32103-32200)
[»] chr4 (1 HSPs)
chr4 (448-525)||(42286518-42286593)


Alignment Details
Target: chr3 (Bit Score: 621; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 1 - 669
Target Start/End: Original strand, 2821208 - 2821875
Alignment:
Q  1 gtcatttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagacgtctttttgatatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2821208 gtcatttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatc-gggggtatttctggactccattcagacgtctttttgatatt 2821306  T
Q  101 tctgttctttactgtttttaagattggtgagaactttacttcatctcttgtaataataatcaaaaccatttcatttgaatgaatttgtttattcggctaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821307 tctgttctttactgtttttaagattggtgagaactttacttcatctcttgtaataataatcaaaaccatttcatttgaatgaatttgtttattcggctaa 2821406  T
Q  201 tcaagattgatgcaaatgctgctatcattacccagctgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgtatgtgtctcagc 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821407 tcaagattgatgctaatgctgctatcattacccagctgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgtatgtgtctcagc 2821506  T
Q  301 caacctgtttcacccacccatcatttcttgattatttttgaaagctgaaaaaggaagtgtaagaatcatagaatatatcttatgatatctttaatattgt 400  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2821507 caaccggtttcatccacccatcatttcttgattatttttgaaagctgaaaaaggaagtgtaagaatcatagaatatatcttataatatctttaatattgt 2821606  T
Q  401 attagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttatatatcttaatattatgatttgttctt 500  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821607 attagagtatcggaagttatttcctgcaattagtttataaccttataagagcatctcttaggattagagtttatatatcttaatattatgatttgttctt 2821706  T
Q  501 gatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttct 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821707 gatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttct 2821806  T
Q  601 tattattttctctcattattttctttaaaattccacaacttcaacaaaggtcttgtatagtttcatctc 669  Q
    ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||    
T  2821807 tattattttctctcattcttatctttaaaatcccacaacttcaacaaaggtcttgtatagtttcatctc 2821875  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 327
Target Start/End: Complemental strand, 2835031 - 2834828
Alignment:
Q  117 tttaagattggtgagaactttacttcatctcttgtaataataat---caaaaccatttcatttgaatgaatttgtttattcggctaatcaagattgatgc 213  Q
    ||||||||||||| || |||| ||||| | ||||||||||||||   |||||||| ||||| ||||||||| | ||||||  ||||| || ||| |||||    
T  2835031 tttaagattggtgggagctttccttcaacccttgtaataataataatcaaaaccacttcatatgaatgaatatttttattttgctaaccacgatcgatgc 2834932  T
Q  214 aaatgctgctatcattacccagctgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgtatgtgtctcagccaacctgtttcac 313  Q
     |      ||||| |||   ||||||||||||| | ||||||||||||| |||| |||| ||| ||    |||||||| ||||||||||||| ||||||     
T  2834931 ta------ctatcgttatgtagctgtaaatttaaacgcctagttgatttaaagtaaatctggacga----tatgtatgcgtctcagccaaccggtttcat 2834842  T
Q  314 ccacccatcatttc 327  Q
    ||| ||||||||||    
T  2834841 ccatccatcatttc 2834828  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 2809970 - 2810063
Alignment:
Q  2 tcatttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagacgtctttttg 95  Q
    ||||||| |||||| ||||||||| |||  |||| ||||| ||||||||||||||||| |  |||| ||| |||||||||| |||||| |||||    
T  2809970 tcatttgaggtgttttataatttgattgtggaagttttgattcaaaatcttgtaatcaagacgtatatctagactccattcggacgtcattttg 2810063  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 614
Target Start/End: Original strand, 48196786 - 48196871
Alignment:
Q  529 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 614  Q
    |||| ||||||| | |||||| |||| ||||||| |||| ||| ||||| ||| ||||| |||| |||||||||||||||||||||    
T  48196786 taaacagggattagggtttagtcttttgtatcaacctactatcgagtcaatataaataatattccaggttcttattattttctctc 48196871  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 290
Target Start/End: Original strand, 2771858 - 2771991
Alignment:
Q  151 taataataatcaaaaccatttcatttgaatgaatttgtttattcggctaatcaagattgatgcaaatgctgctatcattacccagctgtaaatttatatg 250  Q
    |||||||||||||||| | ||||||  ||||||| ||||||||  ||||| |||| ||||||| |      ||||||| | | |||||||| | || | |    
T  2771858 taataataatcaaaactacttcattcaaatgaatatgtttattttgctaaccaagcttgatgcta------ctatcataatctagctgtaactataaagg 2771951  T
Q  251 cctagttgatttgaagttaatcaggaggacatgtatgtat 290  Q
    ||||||||||||||||||||||  ||||| ||||||||||    
T  2771952 cctagttgatttgaagttaatcgagaggatatgtatgtat 2771991  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 2800402 - 2800501
Alignment:
Q  4 atttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagacgtctttttgatatttct 103  Q
    |||||||||||| |||||||| |||   |||||||||| |||||| |||||||||| |   ||| | |||||||||||||||| || ||| || ||||||    
T  2800402 atttgtggtgttttataatttagttttggaagctttgattcaaaaccttgtaatcaagacctatatttggactccattcagacatcatttggacatttct 2800501  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 2771782 - 2771816
Alignment:
Q  69 tctggactccattcagacgtctttttgatatttct 103  Q
    ||||||||||||||||||||| |||||||||||||    
T  2771782 tctggactccattcagacgtcgttttgatatttct 2771816  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 646
Target Start/End: Original strand, 46574483 - 46574573
Alignment:
Q  556 gtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaaca 646  Q
    |||||||| ||| ||  ||||||||||||||  ||||||||||||||||||  ||||| ||| |||| | |||| |  |||||||||||||    
T  46574483 gtatcaaagtactattcagtcagtatcaatactattcaaggttcttattatcatctcttattcttttatctaaattctcacaacttcaaca 46574573  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 2835157 - 2835080
Alignment:
Q  9 tggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagac 86  Q
    ||||||| ||||||||||||   |||||||||| |||||| ||||||| || |   ||| ||||||||||||||||||    
T  2835157 tggtgttttataatttggttctggaagctttgattcaaaaccttgtaaccaagacctatatctggactccattcagac 2835080  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 614
Target Start/End: Original strand, 23539739 - 23539823
Alignment:
Q  529 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 614  Q
    |||||||||||| | ||||||||||| | ||||| |||| ||||||||| ||||||||| |||||| | |||||||||||||||||    
T  23539739 taaatagggattagggtttagccttttggatcaagctactatcaagtca-tatcaataatattcaaaggtcttattattttctctc 23539823  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 11114863 - 11114761
Alignment:
Q  1 gtcatttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagacgtctttttgatatt 100  Q
    ||||||||||||||| |||||||||||||  ||| ||| || |||||| |||||||||| |   |||||||||| |||||||| | ||| |||||| |||    
T  11114863 gtcatttgtggtgttttataatttggttgtggaaacttcgattcaaaaccttgtaatcaagacctatttctggattccattcacatgtcattttgacatt 11114764  T
Q  101 tct 103  Q
    |||    
T  11114763 tct 11114761  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 613
Target Start/End: Original strand, 40569674 - 40569804
Alignment:
Q  484 tattatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatca 583  Q
    |||| |||||||||||||||||| | |||| |  || |||| || |||||||||||| |  || ||  ||| ||||||| |||| ||  || ||||||||    
T  40569674 tattttgatttgttcttgatttaggattgagtccgtgtatcgctataaatagggattagaattgagttttttgtatcaagctactattcagccagtatca 40569773  T
Q  584 ataacatt-caaggttcttattattttctct 613  Q
    |||||||| | ||||||||||||||||||||    
T  40569774 ataacattccgaggttcttattattttctct 40569804  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 11114630 - 11114579
Alignment:
Q  237 tgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgt 288  Q
    |||||||||| |||  | |||||||||||||||||||| |||||||||||||    
T  11114630 tgtaaatttagatgtgtggttgatttgaagttaatcagaaggacatgtatgt 11114579  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 614
Target Start/End: Complemental strand, 16398052 - 16397967
Alignment:
Q  529 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 614  Q
    |||||||||||| || ||||| |||||| ||||| |||| ||  | | |||||||| || |||||||||| |||||||||||||||    
T  16398052 taaatagggattagtatttagtctttgggatcaagctactattcaattagtatcaacaatattcaaggtttttattattttctctc 16397967  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 375 - 489
Target Start/End: Original strand, 7379937 - 7380048
Alignment:
Q  375 atatcttatgatatctttaatattgtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttat 474  Q
    ||||||||| ||| |||||||||| ||||||| ||||  ||||||||||||   ||||||||| || |||   ||||||||| || |||||| | |||||    
T  7379937 atatcttataataactttaatattatattagaatatcttaagttatttcctagaattagtttacaatctt---agagtatctattgggattaaattttat 7380033  T
Q  475 atatcttaatattat 489  Q
    ||  |||| ||||||    
T  7380034 attacttattattat 7380048  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 647
Target Start/End: Complemental strand, 10723853 - 10723775
Alignment:
Q  569 atcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaacaa 647  Q
    ||||||| | ||||||||| |||||| ||||||||||||||||||| |   ||| | ||||||| ||||| ||||||||    
T  10723853 atcaagttattatcaataatattcaaagttcttattattttctctcgtccatttatctaaaattgcacaatttcaacaa 10723775  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 385 - 489
Target Start/End: Complemental strand, 15999333 - 15999232
Alignment:
Q  385 atatctttaatattgtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttatatatcttaat 484  Q
    |||||||  ||||| ||||| ||||||  ||||||| || | |||||||||||||| ||||   ||||||||||||||||| || |||||||  |||| |    
T  15999333 atatcttcgatattatattaaagtatcttaagttatgtcatatgattagtttataatctta---gagtatctcttaggatttgattttatattacttatt 15999237  T
Q  485 attat 489  Q
    |||||    
T  15999236 attat 15999232  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 584
Target Start/End: Original strand, 32103 - 32200
Alignment:
Q  487 tatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaa 584  Q
    |||||||||||||||||| | | |||| | | | ||||||| |||||||||||| || || ||  ||| ||||||| |||| ||||||||| ||||||    
T  32103 tatgatttgttcttgattcatgattgagtctatgtatccctataaatagggattagtattcagttttttgtatcaacctactatcaagtcattatcaa 32200  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 525
Target Start/End: Complemental strand, 42286593 - 42286518
Alignment:
Q  448 agagtatctcttaggattagagtttatatatcttaatattatgatttgttcttgatttaaggttgaatttgtctatcc 525  Q
    ||||||||||||||||| |||||||| || | ||| |||| ||||||| |||||||||||| |||| ||||| |||||    
T  42286593 agagtatctcttaggatcagagttta-at-tgttattattttgatttggtcttgatttaagattgagtttgtgtatcc 42286518  T

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