View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7670_low_5 (Length: 277)

Name: NF7670_low_5
Description: NF7670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7670_low_5
NF7670_low_5
[»] chr8 (1 HSPs)
chr8 (147-267)||(19962380-19962499)
[»] chr7 (5 HSPs)
chr7 (195-267)||(1971415-1971487)
chr7 (30-117)||(37362401-37362487)
chr7 (19-98)||(1971280-1971365)
chr7 (39-92)||(7841460-7841512)
chr7 (160-200)||(1971360-1971400)
[»] chr4 (1 HSPs)
chr4 (21-113)||(41810356-41810445)
[»] chr1 (2 HSPs)
chr1 (21-113)||(31770870-31770959)
chr1 (21-93)||(7607901-7607971)
[»] chr3 (3 HSPs)
chr3 (26-113)||(52130959-52131043)
chr3 (39-92)||(53689434-53689487)
chr3 (30-93)||(52311477-52311539)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 147 - 267
Target Start/End: Original strand, 19962380 - 19962499
Alignment:
Q  147 tggtttcttgaacccttcttcatcttcctttcctcaacttcctcccctaccccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttg 246  Q
    |||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||    
T  19962380 tggtttcttgaacccttcttcatcatcctttcctcaccttcttcccctacccc-cgtatcaccaccatcatccatggcggcaccaactttggtcgttttg 19962478  T
Q  247 tctccgctgcaaccgtctctg 267  Q
    ||||  |||||||||||||||    
T  19962479 tctctactgcaaccgtctctg 19962499  T

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Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 1971415 - 1971487
Alignment:
Q  195 accccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg 267  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1971415 accctccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg 1971487  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 37362487 - 37362401
Alignment:
Q  30 tctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttctgtcacattttgattaaaca 117  Q
    ||||||||| ||||||||||||  ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  37362487 tctccatta-tttgttcaatactgatgcaaactctacagagccccatgcttccctcttcttctccctctgtcacattttgattaaaca 37362401  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 1971280 - 1971365
Alignment:
Q  19 actatctcacctctccattaatt------tgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttct 98  Q
    |||||||||||||||||||| ||      ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  1971280 actatctcacctctccattatttatttattgttcaataccaatgcaaactctacagagccccatgcttccctcttcttctccttct 1971365  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 7841460 - 7841512
Alignment:
Q  39 atttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttct 92  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  7841460 atttgttcaatacca-tgcaaactctacagaaccccatgcttccctcttcttct 7841512  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 1971360 - 1971400
Alignment:
Q  160 ccttcttcatcttcctttcctcaacttcctcccctaccccc 200  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  1971360 ccttcttcatcttcctttcctcaccttcttcccctaccccc 1971400  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 41810356 - 41810445
Alignment:
Q  21 tatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttctgtcacattttgatta 113  Q
    |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||||    
T  41810356 tatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcac-ttttgatta 41810445  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 31770959 - 31770870
Alignment:
Q  21 tatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttctgtcacattttgatta 113  Q
    |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||||    
T  31770959 tatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcac-ttttgatta 31770870  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 7607971 - 7607901
Alignment:
Q  21 tatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctc 93  Q
    |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  7607971 tatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctc 7607901  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 52130959 - 52131043
Alignment:
Q  26 cacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttctgtcacattttgatta 113  Q
    |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||||    
T  52130959 cacctctccatta--ttgttcaataccgatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcac-ttttgatta 52131043  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 53689434 - 53689487
Alignment:
Q  39 atttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttct 92  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  53689434 atttgttcaataccgatgcaaactctacagagccccatgcttccctcttcttct 53689487  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 52311539 - 52311477
Alignment:
Q  30 tctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctc 93  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||||||| | |||||||||||||    
T  52311539 tctccatta-tttgttcaataccgatgcaaactctacagagccccatgttgccctcttcttctc 52311477  T

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