View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7670_low_8 (Length: 250)
Name: NF7670_low_8
Description: NF7670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7670_low_8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 24292692 - 24292447
Alignment:
| Q |
5 |
tgtcgaagaatatatagttacttggtcgctaagccatgattgcacaaaacactagcgttacaaccacttcacgggttatcattcctttgcagcgctatat |
104 |
Q |
| |
|
||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24292692 |
tgtcgaacaatttataattacttggtcgctaagccatgattgcacaaaacactagcgttacaaccacttcacgggttatcattcctttgcagcactatat |
24292593 |
T |
|
| Q |
105 |
atttcacattttacttcataagtaactatcactctcttcaatattgcatctttactccccgtttcttatgtgaaacttgcattgcgccaatggattcttc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24292592 |
atttcacattttacttcataagtaactatcactctcttcaatattgcatctttactccccgtttcttatgtgaaacttgcattgcgccaatggattcttc |
24292493 |
T |
|
| Q |
205 |
tcgagatagtttgtgtcttcggattcattgagatttctcaatggcc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24292492 |
tcgagatagtttgtgtcttcggattcattgagatttctcaatggcc |
24292447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University