View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7671_high_1 (Length: 805)
Name: NF7671_high_1
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_high_1 |
 | |
|
| [»] scaffold0430 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 633; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 18 - 790
Target Start/End: Original strand, 9922598 - 9923377
Alignment:
| Q |
18 |
ataagcatacacaaataaatacatacatacttttattttttaattcattttaatcatattccagattgacaaatctcaaccacttttcatagttgagaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| |
|
|
| T |
9922598 |
ataagcatacacaaataaatacatacatacttttattttttaattcattttaatcatattccagattcacaaatctcatccacttctcatagttgagaac |
9922697 |
T |
|
| Q |
118 |
cagccaaatttttcaaagtgtcgcaattcaaacccctatttcttgtgacaaatatttttgcttaaggttcttcttgatggtgaggaaaacaaaagaaatg |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9922698 |
cagccaaattttttaaagtgtcgcaattcaaacccctattttttgtgacaaatatttttgcttaaggttcttcttgatggtgaggaaaacaaaagaaatg |
9922797 |
T |
|
| Q |
218 |
ggtgtttgaattgtgttggtgtcttttgaatctttttaacataagatataagtgatgaaagtaaagagataaggagaagagataacacaaatatttttct |
317 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9922798 |
ggtttttgaattgtgttggtgtcttttgaatctttttaacataagatataagtgatgaaagtaaagaaataaggagaagagataacacaaatatttttct |
9922897 |
T |
|
| Q |
318 |
tggttcaccccacaccctaggattacacctagtctccttgcacttccaagatatttttccactataagaaaatcctaattacaacaacacaaagacaacc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9922898 |
tggttcaccccacaccctaggattacacctaatctccttgcacttccaagagatttttccaccataaacaaatcctaattacaacaacacaaagacaacc |
9922997 |
T |
|
| Q |
418 |
tagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaacacttattgattacaaaataatgtttttacataaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9922998 |
tagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaacacttattgattacaaaataatgtttttacataaa |
9923097 |
T |
|
| Q |
518 |
ccctaagagtaataaacatatatgaagcacaatacacttaaaatgtgtctgttataatatttcttgactatttt---------------tagtatatgaa |
602 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9923098 |
ctctaagagtaataaacatatatgaagcacaatacacttaaagtgtatctcttataatatttcttgactatttttagacaaggttacaatagtatatgaa |
9923197 |
T |
|
| Q |
603 |
catgttagactatgtatgtatgtatgtatgtgaatttgctcaagtgtcgtaaccttcttcaaacaaactggccatttatatatagagctgaagcttaatg |
702 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9923198 |
catgttagac--------tatgtatgtatgtgaatttgctcaagtgtcgtaaccttctttaaacaaactggccatttatatatagagctgaagcttaatg |
9923289 |
T |
|
| Q |
703 |
accattgcttaagaatcccttgtatttgaatgcctgatttaatgctgagatatccttgataagttttgtccacgtatcatccattcat |
790 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9923290 |
accattgcttaagaatcccttgtatttgaatgcctgatttaatgctgagatgtccttgataaattttgtccacgtatcatccattcat |
9923377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 617 - 762
Target Start/End: Original strand, 15649689 - 15649833
Alignment:
| Q |
617 |
tatgtatgtatgtatgtgaatttgctcaagtgtcgtaaccttcttcaaacaaac-tggccatttatatatagagctgaagcttaatgaccattgcttaag |
715 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | ||||||||||||||||||| ||| | ||||||||| || |||||||| | || |||||||| || |
|
|
| T |
15649689 |
tatgtatgtatgtacgtgaatttgctcaagttccataaccttcttcaaacaaacttggtcctttatatat--agttgaagcttgacgatcattgcttgag |
15649786 |
T |
|
| Q |
716 |
aatcccttgtatttgaatgcctgatttaatgctgagatatccttgat |
762 |
Q |
| |
|
|||| ||||| ||||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
15649787 |
aatctcttgtctttgaattcctgattgaatgctaagatatccttgat |
15649833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 348 - 473
Target Start/End: Complemental strand, 26656805 - 26656680
Alignment:
| Q |
348 |
agtctccttgcacttccaagatatttttccactataagaaaatcctaattacaacaacacaaagacaacctagtcttagatttccttgctttaacctata |
447 |
Q |
| |
|
|||| ||||| |||||||| ||||||| ||||||| |||| ||||||||||||| || |||||||||| | | || |||||||||| | |||||| | |
|
|
| T |
26656805 |
agtccccttgaacttccaacgaatttttcaactataatcaaattctaattacaacaagactaagacaaccttgccctatatttccttgcctcaacctaga |
26656706 |
T |
|
| Q |
448 |
ggacttcctaaactcaatccaaagat |
473 |
Q |
| |
|
||||| |||| ||||||||| |||| |
|
|
| T |
26656705 |
ggactacctattctcaatccagagat |
26656680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 409 - 559
Target Start/End: Original strand, 1696030 - 1696174
Alignment:
| Q |
409 |
aagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaacacttattgattacaaaataatgttt |
508 |
Q |
| |
|
|||||||||| ||| ||||||||||||| | ||||| ||||||| |||| ||||||||| |||| ||||||| || || |||||||| | || | |
|
|
| T |
1696030 |
aagacaaccttgtcctagatttccttgcctcaacctg-aggactttctaatctcaatccagagat--acaacaag-ctgttt--ttacaaaagatagtgt |
1696123 |
T |
|
| Q |
509 |
ttacataaaccctaagagtaataaacatatatgaagcacaatacacttaaa |
559 |
Q |
| |
|
|||||||||| ||| ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
1696124 |
ttacataaactctaggagtagtaaacagatatgaagcacaatacacttaaa |
1696174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 384
Target Start/End: Original strand, 19870500 - 19870611
Alignment:
| Q |
274 |
gaaagtaaagagataaggagaagagataacacaaatatttttct-tggttcaccccacaccctaggattacacctagtctccttgcacttccaagatatt |
372 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||| ||| | |||||||||||||| || || |||| || ||| ||||||||||||||| ||| |
|
|
| T |
19870500 |
gaaagtaaagagataatggaaagagacgacacaaatagtttattgtggttcaccccacaaccggggtttacttctggtccccttgcacttccaagggatt |
19870599 |
T |
|
| Q |
373 |
tttccactataa |
384 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19870600 |
tttccactataa |
19870611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 372 - 556
Target Start/End: Complemental strand, 24717385 - 24717201
Alignment:
| Q |
372 |
ttttccactataagaaaatcctaattacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaag |
471 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||| || ||||||| |||||| ||||||||||| ||| |||||| ||| |||||||| ||||||||| | |
|
|
| T |
24717385 |
tttttcactataatcaaatcctgattacaacagtactaagacaatctagtcctagatttccttacttcaacctagagggcttcctaatctcaatccagaa |
24717286 |
T |
|
| Q |
472 |
atttacaacaacacttattgattacaaaataatgtttttacataaaccctaagagtaataaacatatatgaagcacaatacactt |
556 |
Q |
| |
|
|||||||||||||||| |||||||||||| || || |||||||| |||||||| |||||| | || |||| |||||||||| |
|
|
| T |
24717285 |
atttacaacaacactttttgattacaaaaggtagtgttcacataaactttaagagtagtaaacacaaattaagctcaatacactt |
24717201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 479
Target Start/End: Original strand, 19531125 - 19531195
Alignment:
| Q |
409 |
aagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaa |
479 |
Q |
| |
|
||||||||| |||| || ||||| |||| | ||| || |||||||||||| |||||| ||||||||||||| |
|
|
| T |
19531125 |
aagacaaccaagtcctacatttctttgcctcaacgtagaggacttcctaatctcaatgcaaagatttacaa |
19531195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 479
Target Start/End: Original strand, 22094380 - 22094450
Alignment:
| Q |
409 |
aagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaa |
479 |
Q |
| |
|
|||||||||||||| ||||||| || || | |||||| ||||||| ||| | |||||||||||||||||| |
|
|
| T |
22094380 |
aagacaacctagtcctagattttctcgcctcaacctagaggacttaataatcacaatccaaagatttacaa |
22094450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 592 - 668
Target Start/End: Complemental strand, 29987764 - 29987693
Alignment:
| Q |
592 |
tagtatatgaacatgttagactatgtatgtatgtatgtatgtgaatttgctcaagtgtcgtaaccttcttcaaacaa |
668 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29987764 |
tagtatatgaacatgttagact-----tgtttgtatgtatgtgaatttgctcaagtgtcgtaaccttcttcgaacaa |
29987693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 353 - 482
Target Start/End: Original strand, 24726991 - 24727121
Alignment:
| Q |
353 |
ccttgcacttccaagatatttttccactataagaaaatcct-aattacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggac |
451 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| ||||| | || ||||||| || |||||| || ||||||||||||||||| | |||||| ||||| |
|
|
| T |
24726991 |
ccttgcacttccaagaaatttttccattataatcaaatcatgaacaacaacaatactaagacattcttgtcttagatttccttgcctcaacctagaggac |
24727090 |
T |
|
| Q |
452 |
ttcctaaactcaatccaaagatttacaacaa |
482 |
Q |
| |
|
||||||| |||| |||||||| |||||||| |
|
|
| T |
24727091 |
ttcctaatatcaaaccaaagatatacaacaa |
24727121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 353 - 482
Target Start/End: Original strand, 25069904 - 25070036
Alignment:
| Q |
353 |
ccttgcacttccaagatatttttccactataagaaaatcctaattacaac---aacacaaagacaacctagtcttagatttccttgctttaacctatagg |
449 |
Q |
| |
|
||||||||||||||| |||| || ||||||| ||||| | |||||||| || |||||||||||||||| ||| |||||||| ||| ||| || ||| |
|
|
| T |
25069904 |
ccttgcacttccaagggatttatctactataattaaatcatgattacaacgataatacaaagacaacctagtattaaatttccttacttcaacttaaagg |
25070003 |
T |
|
| Q |
450 |
acttcctaaactcaatccaaagatttacaacaa |
482 |
Q |
| |
|
||||||||| ||||||| | | ||||||||||| |
|
|
| T |
25070004 |
acttcctaatctcaatcgagatatttacaacaa |
25070036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 440 - 482
Target Start/End: Original strand, 12264564 - 12264606
Alignment:
| Q |
440 |
aacctataggacttcctaaactcaatccaaagatttacaacaa |
482 |
Q |
| |
|
|||||| |||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
12264564 |
aacctagaggacttcttaatctcaatccaaagatttacaacaa |
12264606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 28572029 - 28572071
Alignment:
| Q |
426 |
gatttccttgctttaacctataggacttcctaaactcaatcca |
468 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
28572029 |
gatttccttgcttcaacctagaggacttcctaatctcaatcca |
28572071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 19146441 - 19146400
Alignment:
| Q |
273 |
tgaaagtaaagagataagg-agaagagataacacaaatattt |
313 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
19146441 |
tgaaagtaaagagataagggagaatagataacacaaatattt |
19146400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 557
Target Start/End: Original strand, 28572401 - 28572450
Alignment:
| Q |
508 |
tttacataaaccctaagagtaataaacatatatgaagcacaatacactta |
557 |
Q |
| |
|
|||||| |||| ||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
28572401 |
tttacacaaactctatgagtagtaaacatatatgaaacacaatacactta |
28572450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 414 - 498
Target Start/End: Original strand, 17365835 - 17365919
Alignment:
| Q |
414 |
aacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaacacttattgattacaa |
498 |
Q |
| |
|
||||||||| ||||||||||| | |||||| || |||| |||| ||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
17365835 |
aacctagtcatagatttccttatctcaacctagagaactttctaatctcaatccagagatttacaataacacttattgattacaa |
17365919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 400 - 484
Target Start/End: Complemental strand, 19434720 - 19434636
Alignment:
| Q |
400 |
aacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaaca |
484 |
Q |
| |
|
||||| || ||||||| ||| || ||||||||||| | | |||||| |||||||||||| ||||||| | |||||||||| |||| |
|
|
| T |
19434720 |
aacaatactaagacaatctaatcctagatttccttacctaaacctagaggacttcctaatctcaatctagagatttacaaaaaca |
19434636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 349 - 479
Target Start/End: Original strand, 10599913 - 10600046
Alignment:
| Q |
349 |
gtctccttgcacttccaagatatttttccactataagaaaatcctaattacaacaac---acaaagacaacctagtcttagatttccttgctttaaccta |
445 |
Q |
| |
|
||||| ||| ||||| |||| ||||||||||||||| |||||||| |||||||||| || |||||||||| ||| |||||||||||| | |||| | |
|
|
| T |
10599913 |
gtctcgttgtacttctaagaaatttttccactataatcaaatcctacttacaacaacaatactaagacaaccttgtcctagatttccttgtctcaaccca |
10600012 |
T |
|
| Q |
446 |
taggacttcctaaactcaatccaaagatttacaa |
479 |
Q |
| |
|
|||||||| || |||| |||| |||||||||| |
|
|
| T |
10600013 |
gaggacttctaaatctcattccagagatttacaa |
10600046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 482
Target Start/End: Original strand, 8165675 - 8165809
Alignment:
| Q |
351 |
ctccttgcacttccaagatatttttccactataagaaaatcctaattacaa----caacacaaagacaacctagtcttagatttccttgctttaacctat |
446 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| ||||||| ||||||| ||| || ||||||| ||||| || | ||||||| | || |||| |
|
|
| T |
8165675 |
ctccttgcacttccaaggtattttt-cactataattaaatcctgattacaacaatcaatactaagacaatgtagtcctaaacttccttgtctcaatctat |
8165773 |
T |
|
| Q |
447 |
aggacttcctaaactcaatccaaagatttacaacaa |
482 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
8165774 |
aggacttcataatctcaatccagagatttacaacaa |
8165809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 479
Target Start/End: Original strand, 12795439 - 12795646
Alignment:
| Q |
275 |
aaagtaaagagataaggagaagagataacacaaatatttt-tcttggttcaccccacaccctaggattacacctagtctccttgcacttccaagatattt |
373 |
Q |
| |
|
||||||||||||||||| |||||| |||||||| | ||| ||||||||||||||| | || |||||| |||| ||||||||||| || |||| |
|
|
| T |
12795439 |
aaagtaaagagataagggtaagagacaacacaaagaatttatcttggttcaccccataacccgagattactttcagtccccttgcacttctaaagaattt |
12795538 |
T |
|
| Q |
374 |
ttccactataagaaaatcctaattacaacaac---acaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaa |
470 |
Q |
| |
|
||| || |||| ||| ||| |||| |||||| || |||||||||| | | ||||||||||||| | |||||| |||||||||||| || |||||||| |
|
|
| T |
12795539 |
ttc-acgataatcaaaacctgattataacaactgtactaagacaaccttgccctagatttccttgcctcaacctagaggacttcctaatctaaatccaaa |
12795637 |
T |
|
| Q |
471 |
gatttacaa |
479 |
Q |
| |
|
||| ||||| |
|
|
| T |
12795638 |
gatatacaa |
12795646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 354 - 473
Target Start/End: Original strand, 11766830 - 11766953
Alignment:
| Q |
354 |
cttgcacttccaagatatttttc-cactataagaaaatcctaattacaacaa---cacaaagacaacctagtcttagatttccttgctttaacctatagg |
449 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||| ||||||| |||||||||| ||| ||||||| || ||| ||||||||||||| | |||||| | | |
|
|
| T |
11766830 |
cttgcactttcaagagatttttctcactataatcaaatcctgattacaacaataacactaagacaatctcgtcctagatttccttgcctcaacctaaaag |
11766929 |
T |
|
| Q |
450 |
acttcctaaactcaatccaaagat |
473 |
Q |
| |
|
|||||||| ||||||||| |||| |
|
|
| T |
11766930 |
acttcctattctcaatccagagat |
11766953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 479
Target Start/End: Original strand, 28797689 - 28797758
Alignment:
| Q |
409 |
aagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaa |
479 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||||| || ||||||||| ||||||||| |||||||||| |
|
|
| T |
28797689 |
aagacaacctagtcttagattt-tatgcgtaaacctagagaacttcctaatctcaatccagagatttacaa |
28797758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 387 - 482
Target Start/End: Original strand, 9402332 - 9402427
Alignment:
| Q |
387 |
aaatcctaattacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaa |
482 |
Q |
| |
|
||||||| ||||||||| || |||||||||| || ||||||| ||||| | |||||||| | |||| ||| ||||||||| ||||||||||||| |
|
|
| T |
9402332 |
aaatcctgattacaacactacggagacaacctaatcatagattttcttgcctcaacctatacgtcttcttaatctcaatccagagatttacaacaa |
9402427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 482
Target Start/End: Original strand, 20024026 - 20024097
Alignment:
| Q |
411 |
gacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaa |
482 |
Q |
| |
|
|||||||||||| ||||||| ||| | |||||||| |||||||| | | ||||| ||||||||||| ||||| |
|
|
| T |
20024026 |
gacaacctagtcatagattttctttccttaacctagaggacttcttgatctcaaaccaaagatttaaaacaa |
20024097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 30133566 - 30133449
Alignment:
| Q |
356 |
tgcacttccaagatatttttccactataagaaaatcctaattacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcc |
455 |
Q |
| |
|
||||||||||||| |||| |||| ||| |||| || |||||||| |||| |||||||||| ||| |||||||| ||| | |||| ||| ||||||| |
|
|
| T |
30133566 |
tgcacttccaagagatttgaacactgtaattaaattctgattacaacgacactaagacaaccttgtccaagatttccgtgcctcaaccgataagacttcc |
30133467 |
T |
|
| Q |
456 |
taaactcaatccaaagat |
473 |
Q |
| |
|
||| ||||||| |||||| |
|
|
| T |
30133466 |
taatctcaatctaaagat |
30133449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 30134962 - 30134845
Alignment:
| Q |
356 |
tgcacttccaagatatttttccactataagaaaatcctaattacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcc |
455 |
Q |
| |
|
||||||||||||| |||| |||| ||| |||| || |||||||| |||| |||||||||| ||| |||||||| ||| | |||| ||| ||||||| |
|
|
| T |
30134962 |
tgcacttccaagagatttgaacactgtaattaaattctgattacaacgacactaagacaaccttgtccaagatttccgtgcctcaaccgataagacttcc |
30134863 |
T |
|
| Q |
456 |
taaactcaatccaaagat |
473 |
Q |
| |
|
||| ||||||| |||||| |
|
|
| T |
30134862 |
taatctcaatctaaagat |
30134845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 30144513 - 30144396
Alignment:
| Q |
356 |
tgcacttccaagatatttttccactataagaaaatcctaattacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcc |
455 |
Q |
| |
|
||||||||||||| |||| |||| ||| |||| || |||||||| |||| |||||||||| ||| |||||||| ||| | |||| ||| ||||||| |
|
|
| T |
30144513 |
tgcacttccaagagatttgaacactgtaattaaattctgattacaacgacactaagacaaccttgtccaagatttccgtgcctcaaccgataagacttcc |
30144414 |
T |
|
| Q |
456 |
taaactcaatccaaagat |
473 |
Q |
| |
|
||| ||||||| |||||| |
|
|
| T |
30144413 |
taatctcaatctaaagat |
30144396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 401 - 465
Target Start/End: Original strand, 8701097 - 8701161
Alignment:
| Q |
401 |
acaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaat |
465 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||| | | |||||| |||||||||||| |||||| |
|
|
| T |
8701097 |
acaacactaagacaaccttgtcttagattttcttacctcaacctagaggacttcctaatctcaat |
8701161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 401 - 465
Target Start/End: Original strand, 9052984 - 9053048
Alignment:
| Q |
401 |
acaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaat |
465 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||| | | |||||| |||||||||||| |||||| |
|
|
| T |
9052984 |
acaacactaagacaaccttgtcttagattttcttacctcaacctagaggacttcctaatctcaat |
9053048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 717 - 764
Target Start/End: Original strand, 799696 - 799743
Alignment:
| Q |
717 |
atcccttgtatttgaatgcctgatttaatgctgagatatccttgataa |
764 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
799696 |
atcccttgtctttgaatgcctgatttattgatgagatatcctttataa |
799743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 482
Target Start/End: Complemental strand, 13078 - 12992
Alignment:
| Q |
395 |
attacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaa |
482 |
Q |
| |
|
||||||||||||| |||||| | ||| |||||||||| ||| | || ||| |||||||||||| ||||||||| || |||||||||| |
|
|
| T |
13078 |
attacaacaacactaagaca-cttagccttagatttctttgactcaaactaaaggacttcctaatctcaatccagaggtttacaacaa |
12992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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