View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7671_high_10 (Length: 448)

Name: NF7671_high_10
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7671_high_10
NF7671_high_10
[»] chr4 (2 HSPs)
chr4 (5-439)||(10124260-10124694)
chr4 (72-438)||(28649862-28650229)
[»] chr3 (4 HSPs)
chr3 (15-435)||(25040650-25041070)
chr3 (25-438)||(25044385-25044798)
chr3 (44-434)||(25042801-25043190)
chr3 (299-396)||(54479360-54479457)
[»] chr2 (3 HSPs)
chr2 (5-435)||(21392762-21393192)
chr2 (49-438)||(21422111-21422509)
chr2 (299-402)||(1975176-1975279)
[»] chr1 (1 HSPs)
chr1 (44-438)||(24690576-24690970)
[»] chr7 (1 HSPs)
chr7 (359-432)||(39600467-39600540)


Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 5 - 439
Target Start/End: Complemental strand, 10124694 - 10124260
Alignment:
5 aaccatgctcctgttcgttctcgccgacgaggtccgcctcgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcaca 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
10124694 aaccatgctcctgttcgttctcgccgacgaggtccgcctcgtaacggaccaatccctactccattcatatgggccaccgaccgccgagcaaaaattcaca 10124595  T
105 gcttgaaccatcttctccaaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggc 204  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||    
10124594 gcttgaaccatcttctccaaaacagaatctttaacatcaccggcgatgttaaatgcaagagttgtcaaacaaagttccagatgtcgtttgatttggtggc 10124495  T
205 gaaattcgatgtaatctcccaatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtg 304  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10124494 gaaattcgatgtaatctcccaatatttagttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtg 10124395  T
305 cattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgta 404  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10124394 cattgcaatcaagaaaactgtgtgaaaccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgta 10124295  T
405 agcttgaacaattgaaatatttttgcaagtataat 439  Q
    |||||||||||||||||||||||||||||||||||    
10124294 agcttgaacaattgaaatatttttgcaagtataat 10124260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 72 - 438
Target Start/End: Complemental strand, 28650229 - 28649862
Alignment:
72 tatgggccaccgaccgccgagcaaaaatt-cacagcttgaaccatcttctccaaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtc 170  Q
    ||||||| ||| |||| |||||||||| | |||| | | || |||||||| |||||   |||||||||||||| ||| || ||||| |||||||||||||    
28650229 tatgggcaacctaccgtcgagcaaaaaatgcacaacctcaatcatcttctacaaaatgaaatctttaacatcatgggtgacgttcaatgcaagagttgtc 28650130  T
171 taacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaacttcaacaccatgcatgatagggcaccaga 270  Q
     ||| || ||||| |||||||||||||| |||||||||||||||| |||||| ||||||| | | | |||| | || |||||||||||||||||||||      
28650129 aaacgaaattccaaatgtcgtttgattttgtggcgaaattcgatgcaatctctcaatattcgatcataaacatgaataccatgcatgatagggcaccatg 28650030  T
271 gactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttg 370  Q
    || ||||||| |||| ||||||   |   |||| || |||||||  ||||||  |||||||||| ||||||||||||||||||||||||| |||||||||    
28650029 gattttgatgaatcctagattgccaagaagtgttcaatgcaatcgtgaaaacaatgtgaagccgataattgctgagaagaaaaagaatattaattggttg 28649930  T
371 tttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa 438  Q
    ||| ||||| | |||||||||||||||||||| || ||| |||||||||| |||||||||||||||||    
28649929 tttttgttgttgggacaaatgcttggttgttgcaatcttaaacaattgaagtatttttgcaagtataa 28649862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 435
Target Start/End: Complemental strand, 25041070 - 25040650
Alignment:
15 ctgttcgttctcgccgacgaggtccgcctcgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaacca 114  Q
    ||||| || ||||| ||||||| || || |||| |||||  ||||| || || ||||||||||| ||||| |||||||||||||| |||||| | || ||    
25041070 ctgtttgtcctcgctgacgaggaccaccacgtagcggacagatccccatccctttcatatgggcaaccgatcgccgagcaaaaatccacagcctcaatca 25040971  T
115 tcttctccaaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgat 214  Q
    |||  | ||||||||||||||||||||||| ||||||||||| ||||| |||||   |||||||||||| ||||| ||||||||| ||| ||||||| ||    
25040970 tctcttacaaaacagaatctttaacatcaccggcgatgttcaatgcaatagttgcaaaacaaagttccaaatgtcttttgatttgttggtgaaattcaat 25040871  T
215 gtaatctcccaatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatc 314  Q
    | |||||| |||||||||||||||||| | |||||||||||||||||||||||| | | ||||||| |||||| ||||   || ||| ||||||||||||    
25040870 gaaatctctcaatatttggttacaaacatgaacaccatgcatgatagggcaccacaaattttgatgaatccaaaattgccaaaatgtttgcattgcaatc 25040771  T
315 aagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaaca 414  Q
    |||||||  |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||| |||||||||||    
25040770 aagaaaatagtgttaaaccggtgattgctgagaagaaaaagaatatcaattggttgtttctgttgctgggacaaataattggttgttgcaagcttgaaca 25040671  T
415 attgaaatatttttgcaagta 435  Q
    |||||| ||||||||||||||    
25040670 attgaagtatttttgcaagta 25040650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 25 - 438
Target Start/End: Complemental strand, 25044798 - 25044385
Alignment:
25 tcgccgacgaggtccgcctcgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaa 124  Q
    ||||||||||||||  || ||||| |  ||||||||  | || ||| ||||||| ||||||||||||||||||||||||| | | |  |||||||| |||    
25044798 tcgccgacgaggtctaccacgtaatgatccaatcccagtccctttcgtatgggcaaccgaccgccgagcaaaaattcacaaccttagtcatcttctacaa 25044699  T
125 aacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctccc 224  Q
    ||  |||||||||||||||| || || ||||| ||||||||||| | |||||| || || ||||| || ||||||||||| ||||| ||||||||| | |    
25044698 aatggaatctttaacatcaccggtgaggttcaatgcaagagttgccaaacaaaatttcaaatgtccttcgatttggtggcaaaatttgatgtaatcgctc 25044599  T
225 aatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactg 324  Q
    | |||||||| |||||| | || |||||||||||||||||||| |  | ||||||| |||||||||||   |  ||||||||||||||  |||||||| |    
25044598 agtatttggtcacaaacatgaataccatgcatgatagggcaccgggaattttgatgaatccaagattgccaagatgtgtgcattgcaacaaagaaaacag 25044499  T
325 tgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatat 424  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||||||||| || | ||||||||||| |||||||| || ||| |||||||||| |||    
25044498 tgtgaagccgataattgccgagaagaagaagaatatcaattggttgtttctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtat 25044399  T
425 ttttgcaagtataa 438  Q
    ||||||||||||||    
25044398 ttttgcaagtataa 25044385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 44 - 434
Target Start/End: Complemental strand, 25043190 - 25042801
Alignment:
44 cgtaacggaccaatccctattccattcatat--gggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaaaacagaatctttaacat 141  Q
    |||||||||||||||||||| || |||||||  |||| ||| ||||||||| ||||||| | ||  | || ||||||||| ||||| ||||||||||  |    
25043190 cgtaacggaccaatccctatccctttcatatatgggctaccaaccgccgagaaaaaattgatagtctcaatcatcttctctaaaacggaatctttaatgt 25043091  T
142 cacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaac 241  Q
    |||   ||| |||||  |||||||||| | || ||||||| | ||| |||| ||||||||| ||||||| || |||||||  ||||||||||| ||||||    
25043090 cactatcgacgttcaacgcaagagttgccaaataaagttctaaatgacgttcgatttggtgacgaaatttgacgtaatctatcaatatttggtcacaaac 25042991  T
242 ttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattg 341  Q
     | |||||||| |||||||||||||||  |  ||||||||||||||||||| |||||||||||||||   ||| ||| |   ||||||| | |||| |||    
25042990 atgaacaccatacatgatagggcaccaacgcttttgatgtatccaagattgctgaagtgtgtgcatt--tatcgagata---gtgtgaaactggtacttg 25042896  T
342 ctgagaagaaaaag--aatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagt 434  Q
    |  |||||||||||  |||||||| | | || |||||||| | |||||||||||||| || || |||||||||| | |||||||| ||| |||||    
25042895 ccaagaagaaaaagataatatcaactagatgcttctgttgttgggacaaatgcttggctgctgcaagcttgaaccactgaaatatattttcaagt 25042801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 396
Target Start/End: Original strand, 54479360 - 54479457
Alignment:
299 tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttgg 396  Q
    |||||||| || |||||| ||||| |||||||||||||||||||||| ||||||  || |||||| ||| ||||||||||  ||||||||||||||||    
54479360 tgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttgg 54479457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 5 - 435
Target Start/End: Original strand, 21392762 - 21393192
Alignment:
5 aaccatgctcctgttcgttctcgccgacgaggtccgcctcgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcaca 104  Q
    |||||| ||| ||||| | ||||||||||| || | || |||| ||||||||| ||||| || ||||||||||| ||| | | |||||||||||| ||||    
21392762 aaccatactcatgttcctcctcgccgacgaagtgcaccacgtagcggaccaattcctatccctttcatatgggcaaccaatcaccgagcaaaaatccaca 21392861  T
105 gcttgaaccatcttctccaaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggc 204  Q
     | | || |||||  | ||||||| |||||||| |||||| ||||||||||| ||||||||||| | ||||||||| || ||| |||| ||| ||    |    
21392862 acctcaatcatctcttacaaaacaaaatctttagcatcaccggcgatgttcaatgcaagagttgccaaacaaagtttcaaatgccgttcgatctgcgtac 21392961  T
205 gaaattcgatgtaatctcccaatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtg 304  Q
    |||||||||||||||||| |||||||||||||| ||| | |||||||||||||||||||||||| |||  |||||| |||||||| ||   |  ||||      
21392962 gaaattcgatgtaatctctcaatatttggttacgaacatgaacaccatgcatgatagggcaccaaagatcttgatgaatccaagactgccaagatgtgca 21393061  T
305 cattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgta 404  Q
    |||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |    
21393062 cattgcaatcaagaaaacagtgtgaaaccggtaattgccgagaagaaaaagaatatcaattggttgtttctattgctgggacaaatgctcggttgttgca 21393161  T
405 agcttgaacaattgaaatatttttgcaagta 435  Q
    |||||||||||||||| ||||||||||||||    
21393162 agcttgaacaattgaagtatttttgcaagta 21393192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 49 - 438
Target Start/End: Original strand, 21422111 - 21422509
Alignment:
49 cggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaaaacagaatctttaacatcacgggc 148  Q
    |||||||||||||||| | ||||||||||  || || ||||| |||||||| |||||| | || |||||  | ||||||| ||||||||  ||||| ||     
21422111 cggaccaatccctattactttcatatgggaaactgatcgccgtgcaaaaatccacagcctaaatcatctcttacaaaacaaaatctttagtatcactggt 21422210  T
149 gatgt-----tcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaactt 243  Q
    || ||     ||| ||||||||||| | |||||||||||| |||||||| ||||||   || ||||| ||||||||||| | |||||||||||||||| |    
21422211 gacgtgacgttcaatgcaagagttgccgaacaaagttccaaatgtcgttcgatttgcaagcaaaatttgatgtaatctctcgatatttggttacaaacat 21422310  T
244 caacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgct 343  Q
     |||| ||||||||||||||||||||||| ||||||| |||||| ||||   || |||||||||||||||||||||||| |||| |||||  ||||||||    
21422311 gaacaacatgcatgatagggcaccagagaatttgatgaatccaaaattgcctaaatgtgtgcattgcaatcaagaaaacagtgtcaagccaataattgct 21422410  T
344 gagaagaaaaagaatatcaattggttgtttctgttgct----aggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa 438  Q
    |||||||||||||||||| |||||||||||||||||||     |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
21422411 gagaagaaaaagaatatctattggttgtttctgttgctggccgggacaaatgcttggttgttgcaagcttgaacatttgaagtatttttgcaagtataa 21422509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 299 - 402
Target Start/End: Complemental strand, 1975279 - 1975176
Alignment:
299 tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt 398  Q
    ||||| |||||||||||| ||||  ||||||| || ||||||||| |||||||||||| |||||||||||||||| ||||| | ||||||||||||||||    
1975279 tgtgtacattgcaatcaaaaaaatagtgtgaaacctgtaattgctaagaagaaaaagagtatcaattggttgtttatgttgatgggacaaatgcttggtt 1975180  T
399 gttg 402  Q
    ||||    
1975179 gttg 1975176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 44 - 438
Target Start/End: Complemental strand, 24690970 - 24690576
Alignment:
44 cgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaaaacagaatctttaacatca 143  Q
    |||| ||||||||||| ||| || | | ||||| | ||||||| ||||||||||||||||||| | || |||||  | ||||| | ||| ||||||||||    
24690970 cgtagcggaccaatccatataccttacttatggacaaccgaccaccgagcaaaaattcacagcctcaatcatctcttacaaaatacaatttttaacatca 24690871  T
144 cgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaactt 243  Q
    |    || ||||| ||||||||||| | |||||||||| | || || ||||||||| |||  |||| ||| ||||| |||||||| ||||||||||||||    
24690870 ccaatgacgttcaatgcaagagttgacaaacaaagttctaaatatcttttgatttgttggaaaaatgcgacgtaatttcccaatagttggttacaaactt 24690771  T
244 caacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgct 343  Q
     |||||||||||||||||||||  | ||| ||||||| |||||||||||   || ||||| |||||||||||||||| |  ||||||||||||||||  |    
24690770 gaacaccatgcatgatagggcaagaaagattttgatgaatccaagattgtcaaaatgtgtacattgcaatcaagaaaccaatgtgaagccggtaattatt 24690671  T
344 gagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa 438  Q
    ||||||||||||||||||||||| ||||||||||| ||  |||||||| |||||||||| |||| |||| |||| |  |||||||||||||||||    
24690670 gagaagaaaaagaatatcaattgattgtttctgtttctgagacaaatgattggttgttgcaagcatgaataattaaggtatttttgcaagtataa 24690576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 432
Target Start/End: Complemental strand, 39600540 - 39600467
Alignment:
359 atcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaa 432  Q
    ||||||||||||||| ||||| | || || ||| |||| ||||| |||||| |||| ||||||||||| |||||    
39600540 atcaattggttgtttttgttgttgggtcagatgattgggtgttgcaagcttcaacatttgaaatatttctgcaa 39600467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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