View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_high_11 (Length: 446)
Name: NF7671_high_11
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 9 - 428
Target Start/End: Complemental strand, 38927666 - 38927247
Alignment:
| Q |
9 |
gaagaatataaacaagttgaactagctcagtttgttctagcagcagctgagagagtaggttgtcaacaatttgaacgtgcaaacatgttactttcacatt |
108 |
Q |
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| T |
38927666 |
gaagaaaataaacaagttgaactagctcagtttgttctagcagcagctgagagagtaggttgtcaacaatttgaacgtgcaaacatgttactttcacatt |
38927567 |
T |
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| Q |
109 |
ttcatctcatgaatgaaagtggaaatattggaagcacagttcagagacttcttttccatttctctcaagcacttcaagagagaatcaacagagaaaccgg |
208 |
Q |
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| T |
38927566 |
ttcatctcatgaatgaaagtggaaatattggaagcacagttcagagacttcttttccatttctctcaagcccttcaagagagaatcaacagagaaaccgg |
38927467 |
T |
|
| Q |
209 |
acgaggaaagatgaaactgcatagatcaaatgagagaaacaaggagacggaattgattgataaaatggaattagatactaacatagtagttaaatgtcat |
308 |
Q |
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| T |
38927466 |
acgaggaaagatgaaactgcatagatcaaatgagagaaacaaggagacggaattgattgataaaatggaattagatactaacatagtagttaaatgtcat |
38927367 |
T |
|
| Q |
309 |
caaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgttgcatcacaaacaaaaatccatttgattcatcttaata |
408 |
Q |
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| T |
38927366 |
caaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgttgcatcacaaacaaaaatccatttgattcatcttaata |
38927267 |
T |
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| Q |
409 |
ttggatgtggagtgatgagt |
428 |
Q |
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| T |
38927266 |
ttggatgtggagtgatgagt |
38927247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 44837896 - 44837828
Alignment:
| Q |
303 |
tgtcatcaaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacatgtt |
371 |
Q |
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| T |
44837896 |
tgtcatcaaaaacttccttttaatcaagttatgcaatttactggaatacaagctatagttgaacatgtt |
44837828 |
T |
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