View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7671_high_2 (Length: 767)
Name: NF7671_high_2
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 714; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 11 - 748
Target Start/End: Complemental strand, 50687077 - 50686340
Alignment:
| Q |
11 |
aatcaatatatattgaatcaacatcacaacaaaatcgaaaatcaaaactccgcatcaagatcaattcacgaacaactcaacaaacactaggcaattcttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50687077 |
aatcaatatatattgaatcaacatcacagcaaaatcgaaaatcaaaactccgcatcaagatcaattcacgaacaactcaacacacactaggcaattcttt |
50686978 |
T |
|
| Q |
111 |
tttgctgaggggaaccaaatctgttgttaaaaaccacttaagtgagttgatcaactaaattgtctgatggtttattctttgaaaaatgtacgcaaatcct |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50686977 |
tttgctgaggggaaccaaatctgttgttaaaaaccacttaagtgagttgatcaactaaattgtttgatggtttattctttgaaaaatgtacgcaaatcct |
50686878 |
T |
|
| Q |
211 |
tccatttgtgaggttacccaagcaaaaactcccacttgagaaactgaccgtatcgcgagcaaaacactcattgctgagatatttccacaagaccgcgtgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50686877 |
tccatttgtgaggttacccaagcaaaaactcccacttgagaaactgaccgtatcgcgagcaaaacactcattgctgagatatttccacaacaccgcgtgt |
50686778 |
T |
|
| Q |
311 |
cttctcaatagagtgtgatatggttgtccttcatctcccaaggttatccttttcccttttcacagtctcatcttcttcattttctcgcagagtctattca |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50686777 |
cttctcaatagagtgtgatatggttgtccttcatctcccgaggttatccttttcccttttcacagtctcatcttcttcattttctcgcagagtctattca |
50686678 |
T |
|
| Q |
411 |
acaaacaccttaaccacactcttaaacaaaccaccaaaatcatctctcacaacttcagaaccaaatctagaacccataataacccctaaaaccgaaccct |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50686677 |
acaaacaccttaaccacactcttaaacaaaccaccaaaatcatctctcacaacttcagaaccaaatctagaacccataataacccctaaaaccgaaccct |
50686578 |
T |
|
| Q |
511 |
tatcactcgaaaaactcttcattcctccaaacactcatgtcactcacgaaaatgcaagaatcttaaacggttcaaatatattactcagtaactacgccaa |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50686577 |
tatcactcgaaaaactcttcattcctccaaacactcatgtcactcacgaaaatgcaagaatcttaaacggttcaaatatattactcagtaactacgccaa |
50686478 |
T |
|
| Q |
611 |
tgatgctcaaattatacaagcagattttgtcaaaagcagtgttagaaccgaagattgtccttccgatggtcttcctgagttcgctcttgttggtcgttcc |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50686477 |
tgatgctcaaattatacaagcagattttgtcaaaagcagtgttagaaccgaagattgtccttccgatggtcttcctgagttcgctcttgttggtcgttcc |
50686378 |
T |
|
| Q |
711 |
aatgttgggaaatcatcgcttcttaattctattgttcg |
748 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50686377 |
aatgttgggaaatcatcgcttcttaattctattgttcg |
50686340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 749
Target Start/End: Original strand, 35405312 - 35405377
Alignment:
| Q |
684 |
cctgagttcgctcttgttggtcgttccaatgttgggaaatcatcgcttcttaattctattgttcgt |
749 |
Q |
| |
|
||||| |||||| || |||||||||| |||||||||||||| || ||| ||||||| |||||||| |
|
|
| T |
35405312 |
cctgaattcgctgttcttggtcgttctaatgttgggaaatcttctcttattaattcacttgttcgt |
35405377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University