View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_high_23 (Length: 311)
Name: NF7671_high_23
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 45667657 - 45667954
Alignment:
| Q |
1 |
ggtggcctagcaactattatacactgcgatgaatttcgaggtctctttccaaggactactaaagtgaagtgtctaagcgatgcagggttgtttcttgatt |
100 |
Q |
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| T |
45667657 |
ggtggcctagcaactattatacactgcgatgaatttcgaggtctctttccaaggactactaaagtgaagtgtctaagcgatgcagggttgtttcttgatt |
45667756 |
T |
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| Q |
101 |
cgtaagc----aacaaacaaacaaactacattatttcatgctttcagtgccatttctaccatcactac-nnnnnnnttaatctttagttacttattaatt |
195 |
Q |
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| T |
45667757 |
cgtaagcaacaaacaaacaaacaaactacattatttcatgctttcagtgccatttctacaatcactacaaaaaaaattaatctttagttacttattaatt |
45667856 |
T |
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| Q |
196 |
tctgtttgcattgaaattataggattgatatatctggtgagcgcaccctccggaatatgtacaatggtgttgtagggatgcaggtaccgcgcactaac |
293 |
Q |
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| T |
45667857 |
tctgtttgcattgaaattataggattgatatatctggtgagcgcaccctccggaatatgtacaatggtgttgtagggatgcaggtaccgcacactaac |
45667954 |
T |
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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 37972631 - 37972548
Alignment:
| Q |
13 |
actattatacactgcgatgaatttcgaggtctctttccaaggactactaaagtgaagtgtctaagcgatgcagggttgtttctt |
96 |
Q |
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|||||| |||||||||||||||||||||||| || ||||||||||| ||||||||||| || || ||||| ||||| |||||| |
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| T |
37972631 |
actattttacactgcgatgaatttcgaggtcatttcccaaggactaccaaagtgaagtgcctcagtgatgctgggttatttctt |
37972548 |
T |
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