View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7671_high_30 (Length: 250)
Name: NF7671_high_30
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_high_30 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 7300545 - 7300303
Alignment:
| Q |
5 |
gctacattattctacttaaaattcatttagtcaatagttacaagtcacagttatcagacaattttttctactgaatctagctggtaattgctcatatttg |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7300545 |
gctacattcttctacttaaaattcatttagtcaagagttacaagtcacagttatcagacaattttttctactgaatctagctgga---tgctcatatttg |
7300449 |
T |
|
| Q |
105 |
actataattatctgtcttaatgactgtgatttgctacatttactgcaagtcagtgattatgatcaataatcagtaattaattaaagccataaagcaccag |
204 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7300448 |
actacaattatctgtcttaatgactgtgatttgctacatttactgcaagtcagtgattatgatcaataatcagtaattaattaaagccataaagcaccag |
7300349 |
T |
|
| Q |
205 |
catctttgagaagaggaacaagagaaccattaatatgaaaagccaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7300348 |
catctttgagaagaggaacaagagaaccattaatatgaaaagccaa |
7300303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 7333156 - 7333372
Alignment:
| Q |
16 |
ctacttaaaattcatttagtcaatagttacaagtcacagttatcagacaattttttctactgaatctagctggtaattgctcatatttgactataattat |
115 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||| | |||| | |||| |
|
|
| T |
7333156 |
ctacttaaaattcagttagtcaagagttgcaagcctcagttatcagacaattttttctactgaatctagctgga---tgctcatatatcactacagttat |
7333252 |
T |
|
| Q |
116 |
ctgtcttaatgactgtgatttgctacatttactgcaagtcagtgattatgatcaataatcagtaattaattaaagccataaagcaccagcatctttgaga |
215 |
Q |
| |
|
| |||||| |||||||||||||||||| |||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333253 |
cagtctta-------------gctacatttactgcaagtaagtgcttatgatcactaatcat--attaattaaagccataaagcaccagcatctttgaga |
7333337 |
T |
|
| Q |
216 |
agaggaacaagagaaccattaatatgaaaagccaa |
250 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |
|
|
| T |
7333338 |
agtggaacaagagaaccattaatatgaaaagccaa |
7333372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 7376227 - 7376323
Alignment:
| Q |
154 |
tcagtgattatgatcaataatcagtaattaattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccattaatatgaaaagccaa |
250 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7376227 |
tcagtgcttatgatcagtaatgagtaattaattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccgttaatatgaaaagccaa |
7376323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 7340093 - 7340161
Alignment:
| Q |
182 |
taattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccattaatatgaaaagccaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||| |
|
|
| T |
7340093 |
taattaaagccataaagcaccagcatctttgagaagaggaataagtgaactattgatatgaaaagccaa |
7340161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 8909158 - 8909096
Alignment:
| Q |
187 |
aaagccataaagcaccagcatctttgagaagaggaacaagagaaccattaatatgaaaagcca |
249 |
Q |
| |
|
||||||| | ||||||||| | |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8909158 |
aaagccaaagagcaccagcttgtttgagaagaggaacaagagaaccattaatatgacaagcca |
8909096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University