View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7671_high_31 (Length: 250)
Name: NF7671_high_31
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 46179364 - 46179601
Alignment:
| Q |
1 |
tttttaataagtgcttttcaataggtttatatccaacagtcttgatgagttaccccaatgatgaatttcatcaatagattttcttagtgttgtttaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46179364 |
tttttaataagtgcttttcaataggtttatatccaacagtcttaatgagttaccccaatgatgaatttcatcaatagattttcttagtgttgtttaaaaa |
46179463 |
T |
|
| Q |
101 |
atctcaaccaatttcagcaaatagcattactgattttttcggaaaatagttcgtatagtcttaaatatgttttgttcttttaatttggtcaaatcacagc |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46179464 |
atttcaaccaatttcagcaaatagcattactgattttttcggaaaatagttcgtatagtcttaaatatgttttgatcttttaatttggtcaaatcacagc |
46179563 |
T |
|
| Q |
201 |
tttgatcgctattttaaattgcacaatttgggtttcat |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46179564 |
tttgatcgctattttaaattgcacaattttggtttcat |
46179601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University