View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_high_36 (Length: 230)
Name: NF7671_high_36
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 6157224 - 6157415
Alignment:
| Q |
22 |
ttgtgcaatagccaattaacttaacaagataattggaatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccatt |
121 |
Q |
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| T |
6157224 |
ttgtgcaatagccaattaacttaacaagataattggaatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccatt |
6157323 |
T |
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| Q |
122 |
aggatttaactgtttcactgcaacaagctgcaaatgcaacaaaatatagcaaagtgtgtgacgtttgtaacttaaataatgaccaaaagtataat |
216 |
Q |
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| T |
6157324 |
aggatttaaccgtttcactgcaacaagctgcaaatgcaacaaaatatagcaaagtgtgtgacgtttgtaattta---aatgaccaaaagtataat |
6157415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 56020985 - 56021111
Alignment:
| Q |
24 |
gtgcaatagccaattaacttaacaagataattggaatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccattag |
123 |
Q |
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| T |
56020985 |
gtgcaataaccaattaacttaacaagatta---gcatgacgcagcacacttagaatatcaagctctgtcataaattcgtgacagccttgacaaccatcag |
56021081 |
T |
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| Q |
124 |
gatttaactgtttcactgcaacaagctgca |
153 |
Q |
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| T |
56021082 |
gatttaactgttttactgcaacaagctgca |
56021111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 54033322 - 54033450
Alignment:
| Q |
24 |
gtgcaatagccaattaacttaacaagataattggaatgacgcaacacgcatagcataagaacctcggtcagaaattcctgacaaccttgaccaccattag |
123 |
Q |
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||||| ||||||||||||||||| |||| | |||||| | | || || || |||||||||||| |||| |||||||||| ||||||||| ||||| | |
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| T |
54033322 |
gtgcagtagccaattaacttaaccagatta---gaatgatgtagcaagcttaacataagaacctcagtcacaaattcctgaaaaccttgacgaccatcat |
54033418 |
T |
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| Q |
124 |
gatttaactgtttcactgcaacaagctgcaaa |
155 |
Q |
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|| |||| |||||||| ||||||||||||||| |
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| T |
54033419 |
gacttaattgtttcacagcaacaagctgcaaa |
54033450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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