View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_high_38 (Length: 210)
Name: NF7671_high_38
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_high_38 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0314 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 32297813 - 32298016
Alignment:
| Q |
7 |
aagaatataaatgtggagatagcaatgtatccatgtccattagatcacattgtccacactgtttcagtggttatatatgtcgatggtgccggccttatag |
106 |
Q |
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| T |
32297813 |
aagaaaataaatgtggagatagcaatgtatccatgtccattagatcacattgtccacactgtttcagtggttatatatgttgatggtgccggccttatag |
32297912 |
T |
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| Q |
107 |
aagaatcataatctataatgtataaaccatgaacgcagacatgaacaccggacactgacatttacatgtcgacatcgatcaaattttgagaaaatgacat |
206 |
Q |
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| T |
32297913 |
aagaatcataatctataatgtataaaccacgaacacagacatgaacaccggacactgacatttacacgtcgacaccgatcaaattttgagaaaatgatat |
32298012 |
T |
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| Q |
207 |
aatt |
210 |
Q |
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|||| |
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| T |
32298013 |
aatt |
32298016 |
T |
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Target: scaffold0314 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0314
Description:
Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 8949 - 8981
Alignment:
| Q |
178 |
acatcgatcaaattttgagaaaatgacataatt |
210 |
Q |
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| T |
8949 |
acatcgataaaattttgagaaaatgacataatt |
8981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 24295203 - 24295163
Alignment:
| Q |
170 |
acatgtcgacatcgatcaaattttgagaaaatgacataatt |
210 |
Q |
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| T |
24295203 |
acatgtcgacatcgataaaattgtgagaaaatgacacaatt |
24295163 |
T |
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