View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_high_9 (Length: 453)
Name: NF7671_high_9
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 52081903 - 52081472
Alignment:
| Q |
16 |
agtttccattttgtctgaatgaattttttgcaacaaaaattataagacatttgcataattaaaaaggcacagctttattgattcgtttaatgcaccaaaa |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52081903 |
agttcccattttgtctgaatgaattttttgcaacaaaaattataagacatttgcataattaaaaaggcacagctttattgattcgtttaatgcaccaaaa |
52081804 |
T |
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| Q |
116 |
gctttaagaccggctcttttttaataccattgtttttccaaatcagttatacacggctcattcatcttactacgtagttgcttgattttctaaaatgtat |
215 |
Q |
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| T |
52081803 |
gccttaagatcggctcttttttaataccattgtttttccaaatcagttatacacggctcattcatcttactacgtagttgcttgattttctaaaatgtat |
52081704 |
T |
|
| Q |
216 |
atatacagccatgaagttgagtaaaattatgtatattctagaccagatatagtaaa-tctattttgttattttgctaattacatattttgctcaaacctt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52081703 |
atatacagccatgaagttgagtaaaattatgtatattctagaccagatttagtaaaccctattttgttattttgctaattacatattttgctcaaacctt |
52081604 |
T |
|
| Q |
315 |
tactatcattgcaaacagtgaacttgtacaactaaacaaaattgacctttgtcaaactggtttgaataattaagaaatataattaaggttaatcattttc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52081603 |
tactatcattgcaaacagtgaacttgtacaactaaacaaaattgacctttgtcaaactggtttgaataattaagaaatataattaaggttaatcattttc |
52081504 |
T |
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| Q |
415 |
ataatatcttaccatgtatttataacaccaaa |
446 |
Q |
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| T |
52081503 |
ataatatcttagcatgtatttataacaccaaa |
52081472 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 43277437 - 43277477
Alignment:
| Q |
337 |
cttgtacaactaaacaaaattgacctttgtcaaactggttt |
377 |
Q |
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| T |
43277437 |
cttgtccaactaaacaaaattgaactttgtcaaactggttt |
43277477 |
T |
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