View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7671_low_1 (Length: 805)

Name: NF7671_low_1
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7671_low_1
NF7671_low_1
[»] chr1 (5 HSPs)
chr1 (18-790)||(9922598-9923377)
chr1 (617-762)||(15649689-15649833)
chr1 (348-473)||(26656680-26656805)
chr1 (409-559)||(1696030-1696174)
chr1 (274-384)||(19870500-19870611)
[»] chr4 (3 HSPs)
chr4 (372-556)||(24717201-24717385)
chr4 (409-479)||(19531125-19531195)
chr4 (409-479)||(22094380-22094450)
[»] chr2 (7 HSPs)
chr2 (592-668)||(29987693-29987764)
chr2 (353-482)||(24726991-24727121)
chr2 (353-482)||(25069904-25070036)
chr2 (440-482)||(12264564-12264606)
chr2 (426-468)||(28572029-28572071)
chr2 (273-313)||(19146400-19146441)
chr2 (508-557)||(28572401-28572450)
[»] chr5 (2 HSPs)
chr5 (414-498)||(17365835-17365919)
chr5 (400-484)||(19434636-19434720)
[»] chr8 (5 HSPs)
chr8 (349-479)||(10599913-10600046)
chr8 (351-482)||(8165675-8165809)
chr8 (275-479)||(12795439-12795646)
chr8 (354-473)||(11766830-11766953)
chr8 (409-479)||(28797689-28797758)
[»] chr7 (2 HSPs)
chr7 (387-482)||(9402332-9402427)
chr7 (411-482)||(20024026-20024097)
[»] chr3 (6 HSPs)
chr3 (356-473)||(30133449-30133566)
chr3 (356-473)||(30134845-30134962)
chr3 (356-473)||(30144396-30144513)
chr3 (401-465)||(8701097-8701161)
chr3 (401-465)||(9052984-9053048)
chr3 (717-764)||(799696-799743)
[»] scaffold0430 (1 HSPs)
scaffold0430 (395-482)||(12992-13078)


Alignment Details
Target: chr1 (Bit Score: 633; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 18 - 790
Target Start/End: Original strand, 9922598 - 9923377
Alignment:
Q  18 ataagcatacacaaataaatacatacatacttttattttttaattcattttaatcatattccagattgacaaatctcaaccacttttcatagttgagaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||    
T  9922598 ataagcatacacaaataaatacatacatacttttattttttaattcattttaatcatattccagattcacaaatctcatccacttctcatagttgagaac 9922697  T
Q  118 cagccaaatttttcaaagtgtcgcaattcaaacccctatttcttgtgacaaatatttttgcttaaggttcttcttgatggtgaggaaaacaaaagaaatg 217  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9922698 cagccaaattttttaaagtgtcgcaattcaaacccctattttttgtgacaaatatttttgcttaaggttcttcttgatggtgaggaaaacaaaagaaatg 9922797  T
Q  218 ggtgtttgaattgtgttggtgtcttttgaatctttttaacataagatataagtgatgaaagtaaagagataaggagaagagataacacaaatatttttct 317  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9922798 ggtttttgaattgtgttggtgtcttttgaatctttttaacataagatataagtgatgaaagtaaagaaataaggagaagagataacacaaatatttttct 9922897  T
Q  318 tggttcaccccacaccctaggattacacctagtctccttgcacttccaagatatttttccactataagaaaatcctaattacaacaacacaaagacaacc 417  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||  |||||||||||||||||||||||||||||||    
T  9922898 tggttcaccccacaccctaggattacacctaatctccttgcacttccaagagatttttccaccataaacaaatcctaattacaacaacacaaagacaacc 9922997  T
Q  418 tagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaacacttattgattacaaaataatgtttttacataaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9922998 tagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaacacttattgattacaaaataatgtttttacataaa 9923097  T
Q  518 ccctaagagtaataaacatatatgaagcacaatacacttaaaatgtgtctgttataatatttcttgactatttt---------------tagtatatgaa 602  Q
    | |||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||               |||||||||||    
T  9923098 ctctaagagtaataaacatatatgaagcacaatacacttaaagtgtatctcttataatatttcttgactatttttagacaaggttacaatagtatatgaa 9923197  T
Q  603 catgttagactatgtatgtatgtatgtatgtgaatttgctcaagtgtcgtaaccttcttcaaacaaactggccatttatatatagagctgaagcttaatg 702  Q
    ||||||||||        ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9923198 catgttagac--------tatgtatgtatgtgaatttgctcaagtgtcgtaaccttctttaaacaaactggccatttatatatagagctgaagcttaatg 9923289  T
Q  703 accattgcttaagaatcccttgtatttgaatgcctgatttaatgctgagatatccttgataagttttgtccacgtatcatccattcat 790  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  9923290 accattgcttaagaatcccttgtatttgaatgcctgatttaatgctgagatgtccttgataaattttgtccacgtatcatccattcat 9923377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 617 - 762
Target Start/End: Original strand, 15649689 - 15649833
Alignment:
Q  617 tatgtatgtatgtatgtgaatttgctcaagtgtcgtaaccttcttcaaacaaac-tggccatttatatatagagctgaagcttaatgaccattgcttaag 715  Q
    |||||||||||||| ||||||||||||||||  | ||||||||||||||||||| ||| | |||||||||  || |||||||| | || |||||||| ||    
T  15649689 tatgtatgtatgtacgtgaatttgctcaagttccataaccttcttcaaacaaacttggtcctttatatat--agttgaagcttgacgatcattgcttgag 15649786  T
Q  716 aatcccttgtatttgaatgcctgatttaatgctgagatatccttgat 762  Q
    |||| ||||| ||||||| ||||||| |||||| |||||||||||||    
T  15649787 aatctcttgtctttgaattcctgattgaatgctaagatatccttgat 15649833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 348 - 473
Target Start/End: Complemental strand, 26656805 - 26656680
Alignment:
Q  348 agtctccttgcacttccaagatatttttccactataagaaaatcctaattacaacaacacaaagacaacctagtcttagatttccttgctttaacctata 447  Q
    |||| ||||| ||||||||   ||||||| |||||||  |||| ||||||||||||| || |||||||||| | | || |||||||||| | |||||| |    
T  26656805 agtccccttgaacttccaacgaatttttcaactataatcaaattctaattacaacaagactaagacaaccttgccctatatttccttgcctcaacctaga 26656706  T
Q  448 ggacttcctaaactcaatccaaagat 473  Q
    ||||| ||||  ||||||||| ||||    
T  26656705 ggactacctattctcaatccagagat 26656680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 409 - 559
Target Start/End: Original strand, 1696030 - 1696174
Alignment:
Q  409 aagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaacacttattgattacaaaataatgttt 508  Q
    |||||||||| ||| ||||||||||||| | |||||  ||||||| |||| ||||||||| ||||  |||||||  ||  ||  |||||||| |  || |    
T  1696030 aagacaaccttgtcctagatttccttgcctcaacctg-aggactttctaatctcaatccagagat--acaacaag-ctgttt--ttacaaaagatagtgt 1696123  T
Q  509 ttacataaaccctaagagtaataaacatatatgaagcacaatacacttaaa 559  Q
    |||||||||| ||| ||||| |||||| |||||||||||||||||||||||    
T  1696124 ttacataaactctaggagtagtaaacagatatgaagcacaatacacttaaa 1696174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 384
Target Start/End: Original strand, 19870500 - 19870611
Alignment:
Q  274 gaaagtaaagagataaggagaagagataacacaaatatttttct-tggttcaccccacaccctaggattacacctagtctccttgcacttccaagatatt 372  Q
    |||||||||||||||| |  ||||||  ||||||||| |||  | |||||||||||||| ||  || ||||  || ||| |||||||||||||||  |||    
T  19870500 gaaagtaaagagataatggaaagagacgacacaaatagtttattgtggttcaccccacaaccggggtttacttctggtccccttgcacttccaagggatt 19870599  T
Q  373 tttccactataa 384  Q
    ||||||||||||    
T  19870600 tttccactataa 19870611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 372 - 556
Target Start/End: Complemental strand, 24717385 - 24717201
Alignment:
Q  372 ttttccactataagaaaatcctaattacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaag 471  Q
    |||| ||||||||  ||||||| |||||||||  || ||||||| |||||| ||||||||||| ||| |||||| ||| |||||||| ||||||||| |     
T  24717385 tttttcactataatcaaatcctgattacaacagtactaagacaatctagtcctagatttccttacttcaacctagagggcttcctaatctcaatccagaa 24717286  T
Q  472 atttacaacaacacttattgattacaaaataatgtttttacataaaccctaagagtaataaacatatatgaagcacaatacactt 556  Q
    |||||||||||||||| ||||||||||||    || || ||||||||  |||||||| |||||| | || |||| ||||||||||    
T  24717285 atttacaacaacactttttgattacaaaaggtagtgttcacataaactttaagagtagtaaacacaaattaagctcaatacactt 24717201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 479
Target Start/End: Original strand, 19531125 - 19531195
Alignment:
Q  409 aagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaa 479  Q
    ||||||||| |||| || ||||| |||| | ||| || |||||||||||| |||||| |||||||||||||    
T  19531125 aagacaaccaagtcctacatttctttgcctcaacgtagaggacttcctaatctcaatgcaaagatttacaa 19531195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 479
Target Start/End: Original strand, 22094380 - 22094450
Alignment:
Q  409 aagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaa 479  Q
    |||||||||||||| ||||||| || || | |||||| |||||||  ||| | ||||||||||||||||||    
T  22094380 aagacaacctagtcctagattttctcgcctcaacctagaggacttaataatcacaatccaaagatttacaa 22094450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 592 - 668
Target Start/End: Complemental strand, 29987764 - 29987693
Alignment:
Q  592 tagtatatgaacatgttagactatgtatgtatgtatgtatgtgaatttgctcaagtgtcgtaaccttcttcaaacaa 668  Q
    ||||||||||||||||||||||     ||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  29987764 tagtatatgaacatgttagact-----tgtttgtatgtatgtgaatttgctcaagtgtcgtaaccttcttcgaacaa 29987693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 353 - 482
Target Start/End: Original strand, 24726991 - 24727121
Alignment:
Q  353 ccttgcacttccaagatatttttccactataagaaaatcct-aattacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggac 451  Q
    |||||||||||||||| ||||||||| |||||  ||||| | ||  ||||||| || ||||||  || ||||||||||||||||| | |||||| |||||    
T  24726991 ccttgcacttccaagaaatttttccattataatcaaatcatgaacaacaacaatactaagacattcttgtcttagatttccttgcctcaacctagaggac 24727090  T
Q  452 ttcctaaactcaatccaaagatttacaacaa 482  Q
    |||||||  |||| |||||||| ||||||||    
T  24727091 ttcctaatatcaaaccaaagatatacaacaa 24727121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 353 - 482
Target Start/End: Original strand, 25069904 - 25070036
Alignment:
Q  353 ccttgcacttccaagatatttttccactataagaaaatcctaattacaac---aacacaaagacaacctagtcttagatttccttgctttaacctatagg 449  Q
    |||||||||||||||  |||| || |||||||  ||||| | ||||||||   || |||||||||||||||| ||| |||||||| ||| ||| || |||    
T  25069904 ccttgcacttccaagggatttatctactataattaaatcatgattacaacgataatacaaagacaacctagtattaaatttccttacttcaacttaaagg 25070003  T
Q  450 acttcctaaactcaatccaaagatttacaacaa 482  Q
    ||||||||| ||||||| | | |||||||||||    
T  25070004 acttcctaatctcaatcgagatatttacaacaa 25070036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 440 - 482
Target Start/End: Original strand, 12264564 - 12264606
Alignment:
Q  440 aacctataggacttcctaaactcaatccaaagatttacaacaa 482  Q
    |||||| |||||||| ||| |||||||||||||||||||||||    
T  12264564 aacctagaggacttcttaatctcaatccaaagatttacaacaa 12264606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 28572029 - 28572071
Alignment:
Q  426 gatttccttgctttaacctataggacttcctaaactcaatcca 468  Q
    ||||||||||||| |||||| |||||||||||| |||||||||    
T  28572029 gatttccttgcttcaacctagaggacttcctaatctcaatcca 28572071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 19146441 - 19146400
Alignment:
Q  273 tgaaagtaaagagataagg-agaagagataacacaaatattt 313  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  19146441 tgaaagtaaagagataagggagaatagataacacaaatattt 19146400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 557
Target Start/End: Original strand, 28572401 - 28572450
Alignment:
Q  508 tttacataaaccctaagagtaataaacatatatgaagcacaatacactta 557  Q
    |||||| |||| ||| ||||| |||||||||||||| |||||||||||||    
T  28572401 tttacacaaactctatgagtagtaaacatatatgaaacacaatacactta 28572450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 414 - 498
Target Start/End: Original strand, 17365835 - 17365919
Alignment:
Q  414 aacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaacacttattgattacaa 498  Q
    ||||||||| |||||||||||   | |||||| || |||| |||| ||||||||| |||||||||| ||||||||||||||||||    
T  17365835 aacctagtcatagatttccttatctcaacctagagaactttctaatctcaatccagagatttacaataacacttattgattacaa 17365919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 400 - 484
Target Start/End: Complemental strand, 19434720 - 19434636
Alignment:
Q  400 aacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaaca 484  Q
    ||||| || ||||||| ||| || ||||||||||| | | |||||| |||||||||||| ||||||| | |||||||||| ||||    
T  19434720 aacaatactaagacaatctaatcctagatttccttacctaaacctagaggacttcctaatctcaatctagagatttacaaaaaca 19434636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 349 - 479
Target Start/End: Original strand, 10599913 - 10600046
Alignment:
Q  349 gtctccttgcacttccaagatatttttccactataagaaaatcctaattacaacaac---acaaagacaacctagtcttagatttccttgctttaaccta 445  Q
    ||||| ||| ||||| |||| |||||||||||||||  |||||||| ||||||||||   || |||||||||| ||| ||||||||||||  | |||| |    
T  10599913 gtctcgttgtacttctaagaaatttttccactataatcaaatcctacttacaacaacaatactaagacaaccttgtcctagatttccttgtctcaaccca 10600012  T
Q  446 taggacttcctaaactcaatccaaagatttacaa 479  Q
     ||||||||  || |||| |||| ||||||||||    
T  10600013 gaggacttctaaatctcattccagagatttacaa 10600046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 482
Target Start/End: Original strand, 8165675 - 8165809
Alignment:
Q  351 ctccttgcacttccaagatatttttccactataagaaaatcctaattacaa----caacacaaagacaacctagtcttagatttccttgctttaacctat 446  Q
    ||||||||||||||||| ||||||| ||||||||  ||||||| |||||||    ||| || |||||||  ||||| || | |||||||  | || ||||    
T  8165675 ctccttgcacttccaaggtattttt-cactataattaaatcctgattacaacaatcaatactaagacaatgtagtcctaaacttccttgtctcaatctat 8165773  T
Q  447 aggacttcctaaactcaatccaaagatttacaacaa 482  Q
    |||||||| ||| ||||||||| |||||||||||||    
T  8165774 aggacttcataatctcaatccagagatttacaacaa 8165809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 479
Target Start/End: Original strand, 12795439 - 12795646
Alignment:
Q  275 aaagtaaagagataaggagaagagataacacaaatatttt-tcttggttcaccccacaccctaggattacacctagtctccttgcacttccaagatattt 373  Q
    |||||||||||||||||  |||||| |||||||| | ||| ||||||||||||||| | ||   ||||||    |||| ||||||||||| ||   ||||    
T  12795439 aaagtaaagagataagggtaagagacaacacaaagaatttatcttggttcaccccataacccgagattactttcagtccccttgcacttctaaagaattt 12795538  T
Q  374 ttccactataagaaaatcctaattacaacaac---acaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaa 470  Q
    ||| || ||||  ||| ||| |||| ||||||   || |||||||||| | | ||||||||||||| | |||||| |||||||||||| || ||||||||    
T  12795539 ttc-acgataatcaaaacctgattataacaactgtactaagacaaccttgccctagatttccttgcctcaacctagaggacttcctaatctaaatccaaa 12795637  T
Q  471 gatttacaa 479  Q
    ||| |||||    
T  12795638 gatatacaa 12795646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 354 - 473
Target Start/End: Original strand, 11766830 - 11766953
Alignment:
Q  354 cttgcacttccaagatatttttc-cactataagaaaatcctaattacaacaa---cacaaagacaacctagtcttagatttccttgctttaacctatagg 449  Q
    ||||||||| ||||| ||||||| ||||||||  ||||||| ||||||||||   ||| ||||||| || ||| ||||||||||||| | |||||| | |    
T  11766830 cttgcactttcaagagatttttctcactataatcaaatcctgattacaacaataacactaagacaatctcgtcctagatttccttgcctcaacctaaaag 11766929  T
Q  450 acttcctaaactcaatccaaagat 473  Q
    ||||||||  ||||||||| ||||    
T  11766930 acttcctattctcaatccagagat 11766953  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 479
Target Start/End: Original strand, 28797689 - 28797758
Alignment:
Q  409 aagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaa 479  Q
    ||||||||||||||||||||||   ||| | |||||| || ||||||||| ||||||||| ||||||||||    
T  28797689 aagacaacctagtcttagattt-tatgcgtaaacctagagaacttcctaatctcaatccagagatttacaa 28797758  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 387 - 482
Target Start/End: Original strand, 9402332 - 9402427
Alignment:
Q  387 aaatcctaattacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaa 482  Q
    ||||||| |||||||||  ||  |||||||||| || ||||||| ||||| | |||||||| | |||| ||| ||||||||| |||||||||||||    
T  9402332 aaatcctgattacaacactacggagacaacctaatcatagattttcttgcctcaacctatacgtcttcttaatctcaatccagagatttacaacaa 9402427  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 482
Target Start/End: Original strand, 20024026 - 20024097
Alignment:
Q  411 gacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaa 482  Q
    |||||||||||| ||||||| ||| | |||||||| |||||||| | | ||||| ||||||||||| |||||    
T  20024026 gacaacctagtcatagattttctttccttaacctagaggacttcttgatctcaaaccaaagatttaaaacaa 20024097  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 30133566 - 30133449
Alignment:
Q  356 tgcacttccaagatatttttccactataagaaaatcctaattacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcc 455  Q
    ||||||||||||| ||||   |||| |||  |||| || |||||||| |||| |||||||||| |||  |||||||| ||| | |||| ||| |||||||    
T  30133566 tgcacttccaagagatttgaacactgtaattaaattctgattacaacgacactaagacaaccttgtccaagatttccgtgcctcaaccgataagacttcc 30133467  T
Q  456 taaactcaatccaaagat 473  Q
    ||| ||||||| ||||||    
T  30133466 taatctcaatctaaagat 30133449  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 30134962 - 30134845
Alignment:
Q  356 tgcacttccaagatatttttccactataagaaaatcctaattacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcc 455  Q
    ||||||||||||| ||||   |||| |||  |||| || |||||||| |||| |||||||||| |||  |||||||| ||| | |||| ||| |||||||    
T  30134962 tgcacttccaagagatttgaacactgtaattaaattctgattacaacgacactaagacaaccttgtccaagatttccgtgcctcaaccgataagacttcc 30134863  T
Q  456 taaactcaatccaaagat 473  Q
    ||| ||||||| ||||||    
T  30134862 taatctcaatctaaagat 30134845  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 30144513 - 30144396
Alignment:
Q  356 tgcacttccaagatatttttccactataagaaaatcctaattacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcc 455  Q
    ||||||||||||| ||||   |||| |||  |||| || |||||||| |||| |||||||||| |||  |||||||| ||| | |||| ||| |||||||    
T  30144513 tgcacttccaagagatttgaacactgtaattaaattctgattacaacgacactaagacaaccttgtccaagatttccgtgcctcaaccgataagacttcc 30144414  T
Q  456 taaactcaatccaaagat 473  Q
    ||| ||||||| ||||||    
T  30144413 taatctcaatctaaagat 30144396  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 401 - 465
Target Start/End: Original strand, 8701097 - 8701161
Alignment:
Q  401 acaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaat 465  Q
    ||||||| |||||||||| ||||||||||| ||| | | |||||| |||||||||||| ||||||    
T  8701097 acaacactaagacaaccttgtcttagattttcttacctcaacctagaggacttcctaatctcaat 8701161  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 401 - 465
Target Start/End: Original strand, 9052984 - 9053048
Alignment:
Q  401 acaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaat 465  Q
    ||||||| |||||||||| ||||||||||| ||| | | |||||| |||||||||||| ||||||    
T  9052984 acaacactaagacaaccttgtcttagattttcttacctcaacctagaggacttcctaatctcaat 9053048  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 717 - 764
Target Start/End: Original strand, 799696 - 799743
Alignment:
Q  717 atcccttgtatttgaatgcctgatttaatgctgagatatccttgataa 764  Q
    ||||||||| ||||||||||||||||| || |||||||||||| ||||    
T  799696 atcccttgtctttgaatgcctgatttattgatgagatatcctttataa 799743  T

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Target: scaffold0430 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 482
Target Start/End: Complemental strand, 13078 - 12992
Alignment:
Q  395 attacaacaacacaaagacaacctagtcttagatttccttgctttaacctataggacttcctaaactcaatccaaagatttacaacaa 482  Q
    ||||||||||||| |||||| | ||| |||||||||| |||  | || ||| |||||||||||| ||||||||| || ||||||||||    
T  13078 attacaacaacactaagaca-cttagccttagatttctttgactcaaactaaaggacttcctaatctcaatccagaggtttacaacaa 12992  T

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