View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_low_13 (Length: 419)
Name: NF7671_low_13
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 10011331 - 10011701
Alignment:
| Q |
15 |
tggacatcaaattcatatcagtnnnnnnntagaacaccaccacagagcttggatttggacaacaatgaggggtgttcatcttttgcagaaaaaataagaa |
114 |
Q |
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| T |
10011331 |
tggacatcaaattcatatcagtaaaaaaatagaacaccaccacagagcttggatttggacaacaaagaggggtgttcatcttttgcagaaaaaataagaa |
10011430 |
T |
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| Q |
115 |
atcctcggtgatcattgaatcgatccaaaacatgtcgtaaatttcgttgttgatgaaggttgatgaaagattctggcggagaacatgcagctatgcagat |
214 |
Q |
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| T |
10011431 |
atcctcggtgatcattgaatcgatccaaaacatgtcgtaaatttcgttgttg----------atgaaagattctggcggagaacatgcagctatggagat |
10011520 |
T |
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| Q |
215 |
ggcattgaagagttggatagatactgtgttgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaatnnnnnnng |
314 |
Q |
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| T |
10011521 |
ggcattgaagagttggatggatactgtgctgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaataaaaaaag |
10011620 |
T |
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| Q |
315 |
ttatgatagatgctggtttagtgtgtgaacatgcgtgggaaatagatcaactgcatgttttccatatagtacaccaaggta |
395 |
Q |
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| T |
10011621 |
ttatgatagatgctggtttagtgtgtgaacatgcgtgggaaatagatcagctgcatgttttccatatagtacaccaaggta |
10011701 |
T |
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