View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_low_14 (Length: 417)
Name: NF7671_low_14
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 30516243 - 30516656
Alignment:
| Q |
19 |
caagtttgatattttaaatagtaaattaaaaatatgcatttttggaatcataatccgaagtaaacctagatctcaatttgaaacagattgtgc------- |
111 |
Q |
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| T |
30516243 |
caagtttaatattttaaatagtaaattaaaaatatgcatttttggaatcataatccgaagtaaacctagatctcaatttagaaaagattgtgcgattaag |
30516342 |
T |
|
| Q |
112 |
at----------ttaagatcttgacatagtgaatccgaattnnnnnnnn--ggatcataattaataagtgaatatatatacatgatgataaaatcaaatc |
199 |
Q |
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| T |
30516343 |
atcagacgaccattaagatcttgacctagggaatccgaattaaaaaaaaaaggatcataattgataagtgaatatatatacatgatgataaaatcaaatc |
30516442 |
T |
|
| Q |
200 |
caaccgttgattgatgaagggtgacaaatggtttgcacaccaacaccaagaaaatccctagtttggcctcctcctccattctcttcaccttgcacatgtc |
299 |
Q |
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| T |
30516443 |
caaccgttgattgatgaagggtgacaaatggtttgcacaccaacaccaagaaaatccctagtttgccctcctcctccattctcttcaccttgcacatgtc |
30516542 |
T |
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| Q |
300 |
tacgtttagaagggtgcatttgtgaaaaatcacatgcattattatgatcttcctcattgccaagactaatgagtaatgaacttgaagtaccatacatacc |
399 |
Q |
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| T |
30516543 |
tacgtttagaagggtgcatttgtgaaaaatcacatgcattattatgatcttcctcattgccaagactaatgagtaatgaacttgaagtaccatacatacc |
30516642 |
T |
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| Q |
400 |
agtaccaccaaact |
413 |
Q |
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| T |
30516643 |
agtaccaccaaact |
30516656 |
T |
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Back To:
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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 38894237 - 38894312
Alignment:
| Q |
190 |
aaatcaaatccaaccgttgattgatgaagggtgacaaatggtttgcac-accaacaccaagaaaatccctagtttg |
264 |
Q |
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|||||||||||| |||| |||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
38894237 |
aaatcaaatccatccgtcgattgatgaactgtggcaaatggttagcaccaccaacaccaagaaaatccctagtttg |
38894312 |
T |
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