View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_low_17 (Length: 398)
Name: NF7671_low_17
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 162 - 351
Target Start/End: Complemental strand, 52508923 - 52508734
Alignment:
| Q |
162 |
ttttttataatgaaaattgtaagtgtaatagaatacaatttcttcataagtgaacagcagtcatttgcaatttatacgactttgaagagannnnnnn-aa |
260 |
Q |
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| T |
52508923 |
ttttttataatgaaaattgtaagtgtaatagaatacaatttcttcataagtga-caacagtcatttgcaatttatatgactttgaagagattttttttaa |
52508825 |
T |
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| Q |
261 |
tgaatcaaaattatttgtgcgcaatcagcaaaactatatatagactttggtttttgtatcatatgggtccgattcaaattttaagacaacc |
351 |
Q |
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| T |
52508824 |
tgaatcaaaattatttgtgcgcaatcagcaaatctatatatagactttggtttttgaatcatatgggtccaattcaaattttaagacaacc |
52508734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 52509947 - 52509872
Alignment:
| Q |
94 |
atttaccttcatcagggtgtgctctacgtacataaaattgtgataatatgaacttgtatttttacttcttttttat |
169 |
Q |
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| T |
52509947 |
atttaccttcatcagggtgtgctctacgtacataaaattgtgataatatgaacttgtatttttacttcttttttat |
52509872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 52510075 - 52510003
Alignment:
| Q |
20 |
atcagggaccagtactccaaatactccacaacctcataacccatgcttgtttatctctcacggtattcggaaa |
92 |
Q |
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| T |
52510075 |
atcagggacaagtactccaaatactccacaacctcataacccatgcttgtttatctctcacggtattcggaaa |
52510003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 162 - 347
Target Start/End: Original strand, 24621939 - 24622125
Alignment:
| Q |
162 |
ttttttataatgaaaattgtaagtgtaatagaatacaatttcttcataagtgaacagcagtcatttgcaatttatacgactttgaagagannnnnnn--a |
259 |
Q |
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| T |
24621939 |
ttttttataatgaaaattgtaagtgtaatagaatacaatttcttcataagtga-caacagtcatttgcaatttatatgactttgaagagattttttttta |
24622037 |
T |
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| Q |
260 |
atgaatcaaaattatttgtgcgcaatcagcaaaactatatatagactttggtttttgtatcatatgggtccgattcaaattttaagac |
347 |
Q |
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| T |
24622038 |
atgaatcaaaattatttgtgcgcaatcagcaaatctatatatagactttggtttttgaatcatatgggtccaattcaaattttaagac |
24622125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 24620780 - 24620852
Alignment:
| Q |
20 |
atcagggaccagtactccaaatactccacaacctcataacccatgcttgtttatctctcacggtattcggaaa |
92 |
Q |
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| T |
24620780 |
atcagggacaagtactccaaatactccacaacctcataacccatgcttgtttatctctcacggtattcggaaa |
24620852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 24620908 - 24620975
Alignment:
| Q |
94 |
atttaccttcatcagggtgtgctctacgtacataaaattgtgataatatgaacttg-tatttttactt |
160 |
Q |
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| T |
24620908 |
atttaccttcatcagggtgtgctctacgtacataaaattgtgataatatgaacttgttatttttactt |
24620975 |
T |
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