View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_low_18 (Length: 374)
Name: NF7671_low_18
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_18 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 374
Target Start/End: Complemental strand, 1719943 - 1719576
Alignment:
| Q |
7 |
tcgaagaatatgcagtgaaggcataagcaaaccaaccagcacaacattggagatgtttttccgaattaagactgaaccagcagtttacatgtttaattcc |
106 |
Q |
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| T |
1719943 |
tcgaataagatgcagtgaaggcataagcaaaccaaccagcacaacattggagatgtttttccgaattaagactgaaccagcagtttacatgtttaattcc |
1719844 |
T |
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| Q |
107 |
tacaaaaataaatacttcattttgggcaacaatatccgccaaggacgagcaccgaaagagtaatcagaatgaaactctgaggaaacttaagaccaggtat |
206 |
Q |
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| T |
1719843 |
tacaaaaataaatacttcattttgggcaacaatatccgccaaggacgagcaccgaaagagtaatcagaatgaaactctgaggaaacttaagaccaggtat |
1719744 |
T |
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| Q |
207 |
gcacacaacagaaattcaaagactgaaaatccagtttaagaaagacttaattatcttggaatacactttaatgaaacatgtagcgtaataatgtataaaa |
306 |
Q |
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| T |
1719743 |
gcacacaacagaaattcaaagactgaaaatccagtttaagaaagacttaattatcttggaatacactttaatggaacatgtagcgtaataatgtataaaa |
1719644 |
T |
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| Q |
307 |
tggaatttctgtcatagtaagaagctccatgtaaaggctcattactaaacatttcgactgtcagctct |
374 |
Q |
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| T |
1719643 |
tggaatttctgtcatagtaagaagctccatataaaggctcattactaaacatttagaatgtcagctct |
1719576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 374
Target Start/End: Complemental strand, 25421901 - 25421786
Alignment:
| Q |
255 |
aattatcttggaatacactttaatgaaacatgtagcgtaataatgtataaaatggaatttctgtcatagtaagaagctccatgtaaaggctcattactaa |
354 |
Q |
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| T |
25421901 |
aattatcctggaatacactttaatggaacatgttgagtaataatgtataaaatggaatttctgt----attataagctccatataaaggctcattgcaaa |
25421806 |
T |
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| Q |
355 |
acatttcgactgtcagctct |
374 |
Q |
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| T |
25421805 |
acatttagaatgccagctct |
25421786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 32304259 - 32304182
Alignment:
| Q |
174 |
aatgaaactctgaggaaacttaagaccaggtatgcac-------acaacagaaattcaaagactgaaaatccagttta |
244 |
Q |
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| T |
32304259 |
aatgagactctgaggaaaattaagaccaggtatgcacacaagacacaacagaaattcaaagactgaaattccagttta |
32304182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 32304173 - 32304125
Alignment:
| Q |
265 |
gaatacactttaatgaaacatgtagcgtaataatgtataaaatggaatt |
313 |
Q |
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| T |
32304173 |
gaatacactttaatggaacacgtagagtaatcatgtttaaaatggaatt |
32304125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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