View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7671_low_21 (Length: 332)
Name: NF7671_low_21
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_21 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 23 - 323
Target Start/End: Complemental strand, 1857610 - 1857310
Alignment:
| Q |
23 |
tgctatcaccaggttcataaaggctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatcgttgatccaagagtgcttattcat |
122 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1857610 |
tgctatcaccaggttcataaatgctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttattcat |
1857511 |
T |
|
| Q |
123 |
taacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccatg |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
1857510 |
taacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttg |
1857411 |
T |
|
| Q |
223 |
atctcttgtttgttttcttcattccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagacttcttc |
322 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1857410 |
atctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagacttcttc |
1857311 |
T |
|
| Q |
323 |
t |
323 |
Q |
| |
|
| |
|
|
| T |
1857310 |
t |
1857310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 1843602 - 1843298
Alignment:
| Q |
20 |
tgatgctatcaccaggttcataaaggctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatcgttgatccaagagtgcttatt |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1843602 |
tgatgctatcaccaggttcataaatgctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttatt |
1843503 |
T |
|
| Q |
120 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1843502 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
1843403 |
T |
|
| Q |
220 |
atgatctcttgtttgttttcttcattccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagacttc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||| ||| |||||||||| |
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|
| T |
1843402 |
ttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcttttttcaatcaagatagtaaattcattgcaagacttc |
1843303 |
T |
|
| Q |
320 |
ttctc |
324 |
Q |
| |
|
||||| |
|
|
| T |
1843302 |
ttctc |
1843298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 1869211 - 1868908
Alignment:
| Q |
20 |
tgatgctatcaccaggttcataaaggctagatgatgattcatgaagcaagtacctactctcctctacatttgagtcatcgttgatccaagagtgcttatt |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1869211 |
tgatgctatcaccaggttcataaaagctagatgatgattcatgaagcaagaaccgactctcctctacatttgagtcatcattgatccaagagtgcttatt |
1869112 |
T |
|
| Q |
120 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1869111 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
1869012 |
T |
|
| Q |
220 |
atgatctcttgtttgttttcttcattccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagacttc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||| |||||||||| |
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|
| T |
1869011 |
ttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcttttttcaatcaagatagtaaatgcattgcaagacttc |
1868912 |
T |
|
| Q |
320 |
ttct |
323 |
Q |
| |
|
|||| |
|
|
| T |
1868911 |
ttct |
1868908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 27 - 324
Target Start/End: Original strand, 1815437 - 1815735
Alignment:
| Q |
27 |
atcaccaggttcataaaggctagatgatgattcatgaagcaagtacct-actctcctctacatttgagtcatcgttgatccaagagtgcttattcattaa |
125 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||||||||| |||||| |
|
|
| T |
1815437 |
atcaccaaattcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcattgatccaagagtgcttatccattaa |
1815536 |
T |
|
| Q |
126 |
cctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccatgatc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1815537 |
cctcattccctccaattccatagccacttccttcatgcttggtctttcctcccctataagtctcaaacagttcgccgcaagaacagccacctccatgatc |
1815636 |
T |
|
| Q |
226 |
tcttgtttgttttcttcattccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagacttcttctc |
324 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||| |
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|
| T |
1815637 |
acttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagacttcttctc |
1815735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 120 - 317
Target Start/End: Original strand, 9161353 - 9161550
Alignment:
| Q |
120 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
219 |
Q |
| |
|
||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| |||||||| |||||||||||| | || ||||||| ||| |||||| |
|
|
| T |
9161353 |
cattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaacaccttgctgcaagaatagcaacctcc |
9161452 |
T |
|
| Q |
220 |
atgatctcttgtttgttttcttcattccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagact |
317 |
Q |
| |
|
| ||||| | |||||||| ||||| | |||||| |||||||| ||||||| | |||| | ||| || ||||| | ||| |||||||||||||| |
|
|
| T |
9161453 |
ttaatctcctccttgttttcatcatttaaaataccaacttgaatagcttcaaaaattctatcttgttttaaacaagacaaaaagtgcatagcaagact |
9161550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 317
Target Start/End: Original strand, 9199746 - 9199943
Alignment:
| Q |
120 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
219 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || ||||||| ||| |||||| |
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|
| T |
9199746 |
cattaaccttataccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatagcaacctcc |
9199845 |
T |
|
| Q |
220 |
atgatctcttgtttgttttcttcattccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagact |
317 |
Q |
| |
|
| ||||||| |||||||| |||| | | || ||| |||||||| | ||||| | ||||| | ||| || ||||| | ||| |||||||||||||| |
|
|
| T |
9199846 |
ttaatctctttcttgttttcatcatccaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9199943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 317
Target Start/End: Complemental strand, 9119097 - 9118902
Alignment:
| Q |
122 |
ttaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccat |
221 |
Q |
| |
|
||||||| || || ||||| |||||||| | ||||||||| || |||||||| || |||| ||||||||||||| | || ||||||| ||| |||||| | |
|
|
| T |
9119097 |
ttaaccttataccatccaactccatagctatttccttcatactaggtctttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctcctt |
9118998 |
T |
|
| Q |
222 |
gatctcttgtttgttttcttcattccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagact |
317 |
Q |
| |
|
||||||| ||||| || |||||| | || ||| |||||||| ||||||| | ||||| | ||| || ||||| | || |||||||||||||| |
|
|
| T |
9118997 |
aatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagact |
9118902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 317
Target Start/End: Original strand, 9218262 - 9218459
Alignment:
| Q |
120 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
219 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || ||||||| || |||||| |
|
|
| T |
9218262 |
cattaaccttatgccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatagaaacctcc |
9218361 |
T |
|
| Q |
220 |
atgatctcttgtttgttttcttcattccacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagact |
317 |
Q |
| |
|
| ||||||| |||||||| ||||| | || ||| |||||||| | ||||| | ||||| | ||| || ||||| | ||| |||||||||||||| |
|
|
| T |
9218362 |
ttaatctctttcttgttttcatcattgaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9218459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 277
Target Start/End: Original strand, 9229131 - 9229304
Alignment:
| Q |
104 |
tccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgc |
203 |
Q |
| |
|
|||||| |||||| | ||||||||| | ||||| | |||||||||||||| |||||||| |||||||| || ||| |||||||||| ||| | || || |
|
|
| T |
9229131 |
tccaagggtgcttctccattaaccttaacccctctagctccatagccacttctttcatgctaggtctttcctcgcctttaagtctcaagcaccttgcagc |
9229230 |
T |
|
| Q |
204 |
aagaacagccacctccatgatctcttgtttgttttcttcattccacataccatcttgaataacttcaaacacat |
277 |
Q |
| |
|
||||| ||| || ||| | ||||| | ||||| || |||||| | |||||| |||||| ||||||| |||||| |
|
|
| T |
9229231 |
aagaatagcaacttccttaatctcctccttgttctcatcattcaaaataccaacttgaagaacttcagacacat |
9229304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 317
Target Start/End: Original strand, 9170179 - 9170376
Alignment:
| Q |
120 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctcc |
219 |
Q |
| |
|
||||||||| || || ||||| ||||| |||||||||||||| | |||||||| |||||||||||||| |||||| | | ||||||| ||| |||||| |
|
|
| T |
9170179 |
cattaaccttatgccatccaactccattgccacttccttcatacaaggtctttcatcccctctaagtcttaaacaccttgaagcaagaatagcaacctcc |
9170278 |
T |
|
| Q |
220 |
atgatctcttgtttgttttcttcattc-cacataccatcttgaataacttcaaacacattatcgtttttcaagcaagatagaaaatgcatagcaagact |
317 |
Q |
| |
|
| ||||||| ||||| || || ||| || || ||| |||||||| ||||||| | ||||| | ||| || ||||| | ||| |||||||||||||| |
|
|
| T |
9170279 |
ttaatctctttcttgttatcatcgttcacaaat-ccaacttgaatagcttcaaaaaatttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9170376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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