View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7671_low_23 (Length: 325)
Name: NF7671_low_23
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 35403004 - 35402872
Alignment:
| Q |
19 |
ctatgcactatgctaccctcttaatgtgagcctaattccactagacctatctcttacgagccatggacaagtcctctcctaatatttacctctatatttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
35403004 |
ctatgcactatgctaccctcttaatgtgaggctaattccactagacttatctctcacgagccatgaacaagtcctctcctaatatttacctctgtatttc |
35402905 |
T |
|
| Q |
119 |
cttttccgttcaattaccagaatcacaattaaa |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
35402904 |
tttttccgttcaattaccagaatcacaattaaa |
35402872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 186 - 314
Target Start/End: Complemental strand, 35402697 - 35402568
Alignment:
| Q |
186 |
aacatagggattaagttgattctga-acctaatatgtttttaacaagcttctttaagtgttctttgaaacatgaatacatgatattacaaatgcacaaat |
284 |
Q |
| |
|
||||||| ||| || |||||||||| || |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35402697 |
aacatagtgatcaaattgattctgatacgtaatatttttttaacaagtttctttaagtgttctttgaaacatgaatacatgatattacaaatgcacaaat |
35402598 |
T |
|
| Q |
285 |
atttaaagaaatatgaaaatcttaacaaca |
314 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
35402597 |
attcaaagaaatatgaaaatcttaacaaca |
35402568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 10014626 - 10014571
Alignment:
| Q |
261 |
acatgatattacaaatgcacaaatatttaaagaaatatgaaaatcttaacaacaccaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| ||| ||||| ||||||||||| |
|
|
| T |
10014626 |
acatgatattacaaatgcacaaatatcttaagaaacatg--aatctcaacaacaccaa |
10014571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 20421425 - 20421385
Alignment:
| Q |
261 |
acatgatattacaaatgcacaaatatttaaagaaatatgaa |
301 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
20421425 |
acatgatattacaagtgcacaaatatctaaagaaacatgaa |
20421385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 3090503 - 3090448
Alignment:
| Q |
261 |
acatgatattacaaatgcacaaatatttaaagaaatatgaaaatcttaacaacaccaa |
318 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
3090503 |
acatgatattacagatgcacaaatattcaaagaaacatg--aatcttaacaacaccaa |
3090448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 26451409 - 26451375
Alignment:
| Q |
19 |
ctatgcactatgctaccctcttaatgtgagcctaa |
53 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26451409 |
ctatgcactatgctaccctcttaatgtgaacctaa |
26451375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University