View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7671_low_25 (Length: 307)

Name: NF7671_low_25
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7671_low_25
NF7671_low_25
[»] chr5 (1 HSPs)
chr5 (4-290)||(23086805-23087091)
[»] chr6 (5 HSPs)
chr6 (106-290)||(19746428-19746612)
chr6 (93-290)||(5979160-5979357)
chr6 (4-45)||(33576193-33576234)
chr6 (173-290)||(34861629-34861746)
chr6 (5-53)||(19746692-19746740)
[»] chr3 (2 HSPs)
chr3 (174-290)||(36340329-36340445)
chr3 (4-36)||(3837932-3837964)
[»] chr8 (4 HSPs)
chr8 (3-53)||(11339417-11339467)
chr8 (4-53)||(11345099-11345148)
chr8 (4-53)||(11338574-11338623)
chr8 (4-36)||(40794187-40794219)
[»] scaffold0267 (1 HSPs)
scaffold0267 (4-36)||(13413-13445)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 290
Target Start/End: Original strand, 23086805 - 23087091
Alignment:
Q  4 gagtttggagttcaagaatcttggactcagttgtttagaattaactacttcaaaatataccataacttgaatttctatggactcactgaatgtggtattc 103  Q
    ||||||||||||||||| |||||||||||||||||||||||  ||||||  ||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  23086805 gagtttggagttcaagagtcttggactcagttgtttagaatcgactactataaaatctaccataacttgaatttttatggactcactgaatgtggtattc 23086904  T
Q  104 cattgttaccattgtacctttctacggatggacatacacttatattggcaaattctgaagatgaccgggcaattatctataatcggagagacgagagagt 203  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  23086905 cattgttaccattgtacctttctacggatggagatacacttatattggcaaattctgaagatgaccgggcaattatctataatcggagagatgagcgagt 23087004  T
Q  204 agaaagaattagaatttccaacaaactgtgttggttttcttccatggattatgtggaaagcttggtttcgacttgttggaagtaagt 290  Q
    ||| ||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  23087005 agagagaattaaaatttccaacaaactgtgttggttttctgccatggattatgttgaaagcttggtttcgacttgttggaagtaagt 23087091  T

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Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 106 - 290
Target Start/End: Complemental strand, 19746612 - 19746428
Alignment:
Q  106 ttgttaccattgtacctttctacggatggacatacacttatattggcaaattctgaagatgaccgggcaattatctataatcggagagacgagagagtag 205  Q
    ||||| ||| |||||||||||| | |||   ||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||  |||||||||    
T  19746612 ttgttgccactgtacctttctaagaatgacgatacactgatattggcaaattatgaagatgaccgagcaattatctataatctgagagataagagagtag 19746513  T
Q  206 aaagaattagaatttccaacaaactgtgttggttttcttccatggattatgtggaaagcttggtttcgacttgttggaagtaagt 290  Q
    | ||| ||| |||||||| ||||||||||||||||||| | ||||| ||||  ||||||||| ||||||||  ||||||||||||    
T  19746512 agagagttaaaatttccagcaaactgtgttggttttctgcaatggactatgctgaaagcttgatttcgactcattggaagtaagt 19746428  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 290
Target Start/End: Original strand, 5979160 - 5979357
Alignment:
Q  93 atgtggtattccattgttaccattgtacctttctacggatggacatacacttatattggcaaattctgaagatgaccgggcaattatctataatcggaga 192  Q
    ||||| || |||||||||||| ||||||||||| | | ||||| ||||| | || ||| |||||  | ||||  |  | | |||||||||||||||||||    
T  5979160 atgtgatactccattgttacctttgtacctttcgaagaatggagatacattgatcttgacaaatgataaagacaaaagagtaattatctataatcggaga 5979259  T
Q  193 gacgagagagtagaaagaattagaatttccaacaaactgtgttggttttcttccatggattatgtggaaagcttggtttcgacttgttggaagtaagt 290  Q
    ||  |||||||||| |||||| |||||||||||||| |  ||||||| ||  |||| |||||  | ||||||||||||||||||  ||||||||||||    
T  5979260 gataagagagtagagagaattggaatttccaacaaaataagttggttctccgccattgattacattgaaagcttggtttcgactcattggaagtaagt 5979357  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 33576193 - 33576234
Alignment:
Q  4 gagtttggagttcaagaatcttggactcagttgtttagaatt 45  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  33576193 gagtttggagttcaagagtcttggactcagttatttagaatt 33576234  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 34861746 - 34861629
Alignment:
Q  173 caattatctataatcggagagacgagagagtagaaagaattagaatttccaacaaactgtgttggttttcttccatggattatgtggaaagcttggtttc 272  Q
    ||||||||||||||  ||| ||  |||||||||| |||  ||||||||||||| || |   |||||| ||| |||||||||| || |||||||| ||| |    
T  34861746 caattatctataataagagggataagagagtagatagagctagaatttccaacgaaattcattggttctctgccatggattacgttgaaagcttagttcc 34861647  T
Q  273 gacttgttggaagtaagt 290  Q
    ||||  ||||||||||||    
T  34861646 gactccttggaagtaagt 34861629  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 19746740 - 19746692
Alignment:
Q  5 agtttggagttcaagaatcttggactcagttgtttagaattaactactt 53  Q
    |||||||||||||||| |||||||||  ||| ||||||||| |||||||    
T  19746740 agtttggagttcaagagtcttggactttgttatttagaattgactactt 19746692  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 290
Target Start/End: Original strand, 36340329 - 36340445
Alignment:
Q  174 aattatctataatcggagagacgagagagtagaaagaattagaatttccaacaaactgtgttggttttcttccatggattatgtggaaagcttggtttcg 273  Q
    |||||| ||||||| ||||||  |||||||||| | || ||||||||||||| || | || ||||  ||| || | |||||||| |||||||||||||||    
T  36340329 aattatatataatcagagagataagagagtagagaaaactagaatttccaacgaaatatgctggtcctctgcctttgattatgttgaaagcttggtttcg 36340428  T
Q  274 acttgttggaagtaagt 290  Q
    ||  |||||||||||||    
T  36340429 acacgttggaagtaagt 36340445  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 3837932 - 3837964
Alignment:
Q  4 gagtttggagttcaagaatcttggactcagttg 36  Q
    ||||||||||||||||| |||||||||||||||    
T  3837932 gagtttggagttcaagagtcttggactcagttg 3837964  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 11339467 - 11339417
Alignment:
Q  3 cgagtttggagttcaagaatcttggactcagttgtttagaattaactactt 53  Q
    |||||||||| ||||||||||||||||||| || ||||||||| |||||||    
T  11339467 cgagtttggatttcaagaatcttggactcaattatttagaattgactactt 11339417  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 11345148 - 11345099
Alignment:
Q  4 gagtttggagttcaagaatcttggactcagttgtttagaattaactactt 53  Q
    ||||||||| ||||||||||||||||||| || ||||||||| |||||||    
T  11345148 gagtttggatttcaagaatcttggactcaattatttagaattgactactt 11345099  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 11338623 - 11338574
Alignment:
Q  4 gagtttggagttcaagaatcttggactcagttgtttagaattaactactt 53  Q
    ||||||||| |||||||||||||| |||| || |||||| ||||||||||    
T  11338623 gagtttggatttcaagaatcttggtctcaattatttagagttaactactt 11338574  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 40794219 - 40794187
Alignment:
Q  4 gagtttggagttcaagaatcttggactcagttg 36  Q
    |||||||||||||||||||||||||||| ||||    
T  40794219 gagtttggagttcaagaatcttggactcggttg 40794187  T

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Target: scaffold0267 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 13413 - 13445
Alignment:
Q  4 gagtttggagttcaagaatcttggactcagttg 36  Q
    ||||||||||||||||| |||||||||||||||    
T  13413 gagtttggagttcaagagtcttggactcagttg 13445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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