View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_low_26 (Length: 295)
Name: NF7671_low_26
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 290
Target Start/End: Complemental strand, 18789432 - 18789149
Alignment:
| Q |
2 |
caactgagctaagctcacgaggacttaatcttgtaacttaaaaataccctaaagcaaaaactttaaaatttataggaactcatatgctaaaagaaaacat |
101 |
Q |
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| T |
18789432 |
caactgagttaagctcacgaggacttaatcttgtaacttaaaaa---cctaaagcaaaaactttaaaattaataggaactcat--gctaaaagaaaacat |
18789338 |
T |
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| Q |
102 |
gctctggcgaaaaaacaggcgatttgtcgctgttcacatatcaaattcgttttagctttcttcttcctaaggtaacccctgttcttcacgaccgccatgc |
201 |
Q |
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| T |
18789337 |
gctctggcgaaaaaacgggcgatttgtcattgttcacttatcaaattcgttttagctttcttcttcctaaggtaacccctgttctaaacgaccgccatgc |
18789238 |
T |
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| Q |
202 |
cttcaccacctccgatcatcatgaaaccaccaataatcaactggaaatgtctagttgattctactcctgatcccaagccaacaccaaac |
290 |
Q |
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| T |
18789237 |
cttcaccatctccgatcatcatgaaatcaccaataatcaactggaaatgtctagctgattctactcctgatcccaaaccaacacaaaac |
18789149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 10735875 - 10735905
Alignment:
| Q |
2 |
caactgagctaagctcacgaggacttaatct |
32 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10735875 |
caactgagctaagctcacgaggacttaatct |
10735905 |
T |
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