View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_low_28 (Length: 276)
Name: NF7671_low_28
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_28 |
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| [»] scaffold0699 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 260
Target Start/End: Complemental strand, 43351164 - 43350911
Alignment:
| Q |
7 |
tttggtggtgtagatagtagtgttttttcaaataggaggtgtaattcaaagtttagtataatatctcattaaagtttgtttgtctaaaccaaaataccaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43351164 |
tttggtggtgtagatagtagtgttttttcaaataggaggtgtaattcaaagtttagtttaatatctcattaaagtttgtttgtctaaaccaaaataccaa |
43351065 |
T |
|
| Q |
107 |
acaaagttacatgcaacttggttaatgccacttgtaagtcaaaatcagtctttcccatgatggaaaaagattcaccttttccatgttaaatggtaccttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |||||| |
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| T |
43351064 |
acaaagttacatgcaacttggttaatgccacttgtaagtcaaaatcagcctttcccatgatgggaaaggattcaccttttccatgttaaatgacaccttt |
43350965 |
T |
|
| Q |
207 |
gtaaaagttcacctgaacagcctcaatgacatgtagctccgcccatgttgatat |
260 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
43350964 |
gtaaaagttcacctgaacaccctcaatgacatgtagctccgcccatgctgatat |
43350911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 8424210 - 8424054
Alignment:
| Q |
7 |
tttggtggtgtagatagtagtgttttttcaaataggaggtgtaattcaaagtttagtataatatctcattaaagtttgtttgtctaaaccaaaataccaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8424210 |
tttggtggtgtagatagtagtgttttttcaaataggaggtgtaattcaatgtttagtttaatatctcattaaagtttgtttgtctaaaccaaaataccaa |
8424111 |
T |
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| Q |
107 |
acaaagttacatgcaacttggttaatgccacttgtaagtcaaaatcagtctttccca |
163 |
Q |
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| T |
8424110 |
acaaagttacatgcaacttggttaatgccacttgtaagtcaaaatcagcctttccca |
8424054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 37510358 - 37510301
Alignment:
| Q |
13 |
ggtgtagatagtagtgttttttcaaataggaggtgtaattcaaagtttagtataatat |
70 |
Q |
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||||||||| |||||||| ||| |||| ||||||||| ||||||||||| | |||||| |
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| T |
37510358 |
ggtgtagattgtagtgttgttttaaatgggaggtgtatttcaaagtttaatttaatat |
37510301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0699 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0699
Description:
Target: scaffold0699; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 4483 - 4630
Alignment:
| Q |
7 |
tttggtggtgtagatagtagtgttttttcaaataggaggtgtaattcaaagtttagtataatatctcattaaagtttgtttgtctaaaccaaaataccaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||| |||||||||| |
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| T |
4483 |
tttggtggtgtagatagtagtgttttttcaaataggaggtgtaattcaaagtttagtttaatatttcattaaagtctgtttgtctaaataaaaataccaa |
4582 |
T |
|
| Q |
107 |
acaaagttacatgcaacttggttaatgccacttgtaagtcaaaatcag |
154 |
Q |
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| T |
4583 |
acaaagttacatgcaacttggttaatgccacttgtaagtcaaaatcag |
4630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 198200 - 198158
Alignment:
| Q |
156 |
ctttcccatgatggaaaaagattcaccttttccatgttaaatg |
198 |
Q |
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| T |
198200 |
ctttctcatggtggaaaaagattcaccttttccatgttaaatg |
198158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 52870155 - 52870197
Alignment:
| Q |
156 |
ctttcccatgatggaaaaagattcaccttttccatgttaaatg |
198 |
Q |
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| T |
52870155 |
ctttcccatgatggaaaaggattcacctttcccatgtgaaatg |
52870197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 10198272 - 10198232
Alignment:
| Q |
156 |
ctttcccatgatggaaaaagattcaccttttccatgttaaa |
196 |
Q |
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| T |
10198272 |
ctttcccatggtggaaaaagattgacctttcccatgttaaa |
10198232 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 20040272 - 20040308
Alignment:
| Q |
161 |
ccatgatggaaaaagattcaccttttccatgttaaat |
197 |
Q |
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| T |
20040272 |
ccatgatggaaaatgattcacctttcccatgttaaat |
20040308 |
T |
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