View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_low_30 (Length: 260)
Name: NF7671_low_30
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_30 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: scaffold0329 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 16363 - 16591
Alignment:
| Q |
20 |
gggggttccatttttgcccatatagcgaggaagggagtaagggtgtttctcgtttagtgcaccattttaagtcactacaccttagtatcgacgaacgaat |
119 |
Q |
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| T |
16363 |
gggggttccatttttgcccatatagcgaggaagggagtaagggtatttctcgtttagtgcaccatcttaaataactacaccttagtatcgacgaacgaat |
16462 |
T |
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| Q |
120 |
aagtacgatacataaagcccttgagagtaattggagtttgtttatggctttggaggagactttgaggatggttaaacaatggatgtttggaatgtgtatg |
219 |
Q |
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| T |
16463 |
aagtacgatacagaaagcccttgagagtaattggagtttgtttatggctttggaggagactttgaggat-gttaaacaatggatgtttggaatgtgtatg |
16561 |
T |
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| Q |
220 |
agttttcatgccataagtcgttcttctcac |
249 |
Q |
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| T |
16562 |
agttttcatgtcatgagtcgttcttgtcac |
16591 |
T |
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Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 19287842 - 19287652
Alignment:
| Q |
40 |
tatagcgaggaagggagtaagggtgtttctcgtttagtgcaccattttaagtcactacaccttagtatcgacgaacgaataagtacgatacataaagccc |
139 |
Q |
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| T |
19287842 |
tatagtgaggaagggagcaagggtgtttctcgtttggtacaccatcttaagtcactacaccttagtactgacgaacgggaaaatacgatacggaaagccc |
19287743 |
T |
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| Q |
140 |
ttgagagtaattggagtttgtttatggctttggaggagactttgaggatggttaaacaatggatgtttggaatgtgtatgagttttcatgc |
230 |
Q |
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| T |
19287742 |
ttgagagtgattggagtttatttatggctttggaggagtctttgaggatggttaaacaatggatgtgtgaaatgtgtatgagttttcatgc |
19287652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 35149632 - 35149709
Alignment:
| Q |
156 |
tttgtttatggctttggaggagactttgaggatggttaaacaatggatgtttggaatgtgtatgagttttcatgccat |
233 |
Q |
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| T |
35149632 |
tttgtttatggtgttggaggagtctttgaagatggttgcgcaatgaatgtttggaaaatgtatgagttttcatgccat |
35149709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 49715 - 49631
Alignment:
| Q |
149 |
attggagtttgtttatggctttggaggagactttgaggatggttaaacaatggatgtttggaatgtgtatgagttttcatgccat |
233 |
Q |
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| T |
49715 |
attggagtttgtttatggcgtttgaaaagtctatgaggatggttgagcaatggatatttggaaggtgtataaattttcataccat |
49631 |
T |
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