View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_low_39 (Length: 229)
Name: NF7671_low_39
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_39 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 28895220 - 28895006
Alignment:
| Q |
6 |
aaatcataattcatattttctgttcttttgttcagagtgagcaaaaatggggagaaagaacaacaaaagaaaaaaggaagagattgctgaaagtttttgc |
105 |
Q |
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| T |
28895220 |
aaatcataattcatattt-ctgatattttgttcagagtgagcaaaaatggggagaaagaacaacaaaagaaaaaaggaagagattgctgaaagtttttgc |
28895122 |
T |
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| Q |
106 |
tttatttgcaaagatggtggtgacatgagaatctgtgattttaggtactaacttcattgcatgctattcattttatgcctttatttttatataatcaaaa |
205 |
Q |
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| T |
28895121 |
tttatttgcaaagatggtggtgacatgagaatctgtgattttaggtactaacttcattgcatgcttttcat--------tttatttttatataatcaaaa |
28895030 |
T |
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| Q |
206 |
tcaatttcactatttaactacatt |
229 |
Q |
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|||||||||||||||||||||||| |
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| T |
28895029 |
tcaatttcactatttaactacatt |
28895006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 152
Target Start/End: Complemental strand, 28905566 - 28905461
Alignment:
| Q |
47 |
caaaaatggggagaaagaacaacaaaagaaaaaaggaagagattgctgaaagtttttgctttatttgcaaagatggtggtgacatgagaatctgtgattt |
146 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||| |||||| |||||||||| |
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| T |
28905566 |
caaaaatggtgaaaaagaacaacaaaagaaaaaaggaagagattgctgaagattattgctttgtttgcaaagatggtggtgaaatgagagtctgtgattt |
28905467 |
T |
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| Q |
147 |
taggta |
152 |
Q |
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| T |
28905466 |
tgggta |
28905461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 28918573 - 28918466
Alignment:
| Q |
45 |
agcaaaaatggggagaaagaacaacaaaagaaaaaaggaagagattgctgaaagtttttgctttatttgcaaagatggtggtgacatgagaatctgtgat |
144 |
Q |
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| T |
28918573 |
agcaaaaatggtgaaaaagaataacaaaagaaagaaggaagagattgctgaaggttgttgcttttcttgcaaagatggtggtcaaatgagggtctgtgat |
28918474 |
T |
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| Q |
145 |
tttaggta |
152 |
Q |
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| T |
28918473 |
tctaggta |
28918466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 28938906 - 28938790
Alignment:
| Q |
47 |
caaaaatggggagaaagaacaacaaaagaaaaaaggaagagattgctgaaagtttttgctttatttgcaaagatggtggtgacatgagaatctgtgattt |
146 |
Q |
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|||||||||||| || |||||||||||||| ||||||||| || ||||| || ||||||| | ||||||||||||||||| ||||| |||||||||| |
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| T |
28938906 |
caaaaatggggaaaaggaacaacaaaagaagaaaggaagaaatctctgaagattattgctttttctgcaaagatggtggtgaattgagagtctgtgattt |
28938807 |
T |
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| Q |
147 |
taggtactaacttcatt |
163 |
Q |
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| T |
28938806 |
caggtactaacatcatt |
28938790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 152
Target Start/End: Complemental strand, 28928322 - 28928217
Alignment:
| Q |
47 |
caaaaatggggagaaagaacaacaaaagaaaaaaggaagagattgctgaaagtttttgctttatttgcaaagatggtggtgacatgagaatctgtgattt |
146 |
Q |
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|||| ||||| | |||||| ||||||||||||||||||||||| |||||| | |||||| ||||||||||||||||||| ||||| | |||||||| |
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| T |
28928322 |
caaagatgggaaaaaagaataacaaaagaaaaaaggaagagatcgctgaagaatggtgctttgtttgcaaagatggtggtgaactgagagtatgtgattt |
28928223 |
T |
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| Q |
147 |
taggta |
152 |
Q |
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||||| |
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| T |
28928222 |
caggta |
28928217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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