View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7671_low_4 (Length: 533)
Name: NF7671_low_4
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7671_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 13 - 518
Target Start/End: Complemental strand, 32065541 - 32065038
Alignment:
| Q |
13 |
aatattcaggaaattgtgagtgctggaggcagtacagtatggggaaatcctgcagatgtagggagtgttgtaggaggggaagcatttgatgtggttttgg |
112 |
Q |
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| T |
32065541 |
aatattcaggaaattgtgagtgctggaggcagtacagtatggggaaatcctgcagatgtagggagtgttgtaggaggggaagcatttgatgtggttttgg |
32065442 |
T |
|
| Q |
113 |
acaacaatggcaaggatcttgaggctgtgaggtttgttgtattgattcttgttagcttttgttcaatgattaacttgtatcgtatgccttcatgttaact |
212 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32065441 |
acaacaatggcaaggatcttgagtctgtgaggtttgttgtattgattcttgttagcttttgttcaatgattaacttgtattgtatgccttcatgttaact |
32065342 |
T |
|
| Q |
213 |
caacaggttttaagatgtaagagcagcagcgtgcaacacgtacaatatgtttatattacgcagacttgttagttgtccgatatgtgtcggtgttcgatac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32065341 |
caacaggttttaagatgtaagagcagcagcgtgcaacacgtacaatttgtttatattacgcagacttgttagttgtccgatatgtgtcggtgttcgatac |
32065242 |
T |
|
| Q |
313 |
taaaacaagtgtcaatgtttcatattgcaatacagttattattctgttaaagaaacagaaactattctaatatatatgcagccagctacagtctttaaga |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
32065241 |
taaaacaagtgtcaatgtttcatattgcaatacagttattattctgttaaagaaacagaaactattctaat--atatgcagccaggtacagtctttaaga |
32065144 |
T |
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| Q |
413 |
aagacatcctaatcttgatcttaacttgtaggccagtgattgattgggccaagagtgctggtgctaagcaattcttgttcatcagtagtgctggaatcta |
512 |
Q |
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| T |
32065143 |
aagacatcctaatcttgatcttaacttgtaggccagtgattgattgggccaagagtgctggtgctaagcaattcttgttcatcagtagtgctggaatcta |
32065044 |
T |
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| Q |
513 |
caaaac |
518 |
Q |
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|||||| |
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| T |
32065043 |
caaaac |
32065038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 408 - 517
Target Start/End: Complemental strand, 51281304 - 51281195
Alignment:
| Q |
408 |
taagaaagacatcctaatcttgatcttaacttgtaggccagtgattgattgggccaagagtgctggtgctaagcaattcttgttcatcagtagtgctgga |
507 |
Q |
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||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
51281304 |
taagacagacatcctaatctcaatctaaacttgtaggccagtgatcgattgggccaagagtactggtgccaagcaattcttgttcatcagtagtgctgga |
51281205 |
T |
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| Q |
508 |
atctacaaaa |
517 |
Q |
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|||||||||| |
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| T |
51281204 |
atctacaaaa |
51281195 |
T |
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