View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7671_low_5 (Length: 491)

Name: NF7671_low_5
Description: NF7671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7671_low_5
NF7671_low_5
[»] chr7 (13 HSPs)
chr7 (17-476)||(1781181-1781640)
chr7 (114-370)||(8859429-8859685)
chr7 (114-370)||(8875832-8876087)
chr7 (129-292)||(8858823-8858986)
chr7 (129-289)||(2478577-2478736)
chr7 (223-298)||(12866135-12866210)
chr7 (198-291)||(23103149-23103242)
chr7 (223-291)||(19856882-19856950)
chr7 (229-309)||(16803168-16803245)
chr7 (169-272)||(7228084-7228188)
chr7 (239-291)||(25992368-25992420)
chr7 (198-300)||(983732-983834)
chr7 (202-291)||(26573258-26573346)
[»] chr1 (11 HSPs)
chr1 (129-300)||(15243817-15243988)
chr1 (115-312)||(19705385-19705581)
chr1 (226-434)||(19708234-19708442)
chr1 (221-306)||(23412488-23412573)
chr1 (349-422)||(19707013-19707086)
chr1 (130-218)||(4857231-4857319)
chr1 (231-310)||(15877312-15877391)
chr1 (214-300)||(1971643-1971729)
chr1 (231-291)||(26780917-26780977)
chr1 (199-310)||(33078338-33078449)
chr1 (178-272)||(47900733-47900827)
[»] chr8 (3 HSPs)
chr8 (115-265)||(7634596-7634746)
chr8 (127-247)||(29452866-29452986)
chr8 (170-302)||(30122889-30123021)
[»] chr5 (4 HSPs)
chr5 (130-298)||(15608257-15608425)
chr5 (131-299)||(17468371-17468538)
chr5 (199-291)||(27892864-27892955)
chr5 (245-308)||(43582570-43582633)
[»] chr2 (2 HSPs)
chr2 (170-310)||(17558802-17558942)
chr2 (221-300)||(27467827-27467906)
[»] chr4 (6 HSPs)
chr4 (198-300)||(7355366-7355468)
chr4 (188-302)||(10178877-10178991)
chr4 (221-272)||(37239435-37239486)
chr4 (230-291)||(51461088-51461149)
chr4 (187-270)||(19943500-19943583)
chr4 (240-291)||(22271136-22271187)
[»] scaffold0037 (1 HSPs)
scaffold0037 (223-306)||(107643-107726)
[»] chr3 (2 HSPs)
chr3 (178-270)||(48559383-48559475)
chr3 (239-290)||(4288228-4288279)
[»] chr6 (1 HSPs)
chr6 (223-278)||(14274251-14274306)
[»] scaffold0004 (1 HSPs)
scaffold0004 (237-306)||(119124-119193)


Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Complemental strand, 1781640 - 1781181
Alignment:
Q  17 tgttagggaaatagtatgttagcttaagaggtcgggtagtgctcttgaatggagtgttaaacattattctgattttctttatgtcactgatgcatatatg 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781640 tgttagggaaatagtatgttagcttgagaggtcgggtagtgctcttgaatggagtgttaaacattattctgattttctttatgtcactgatgcatatatg 1781541  T
Q  117 ataaccggtcattttgtaggttattatattacatttatcctccataatcgataagaaattaagtgattgaatgacctataacatctaatcagtgaccatt 216  Q
    |||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1781540 ataaccggtcgttttgtaggttattatattgcacttatcccccataatcgataagaaattaagtgattgaatggcctataacatctaatcagtgaccatt 1781441  T
Q  217 tattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaacatgatgaggaaatttat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1781440 tattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaacatgatgaggaaatgtat 1781341  T
Q  317 tggagatatatgcagctacaacatataaaacaagtttggcgatgtatgaagatacaacgttagaatatgcaaagagttataacgcgacagatcatctagg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  1781340 tggagatatatgcagctacaacatataaaacaagtttggcgatgtatgaagatacaatgttagaatatgcaaagagttatagcgcgacagatcatctagg 1781241  T
Q  417 atggtcgtacaatagtacgaacccaagggaccattgcttatcattgcttaagatctatgt 476  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  1781240 atggtcgtacaatagtacgaacccaagggactattgcttatcattgcttaagagctatgt 1781181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 114 - 370
Target Start/End: Complemental strand, 8859685 - 8859429
Alignment:
Q  114 atgataaccggtcattttgtaggttattatattacatttatcctccataatcgataagaaattaagtgattgaatgacctataacatctaatcagtgacc 213  Q
    ||||||||| || |||||||||||||||||||| || |||| | |||||||  || ||||||| ||| |||| ||||| |||| ||||||||||| |||     
T  8859685 atgataacccgtaattttgtaggttattatattgcacttattccccataatatatgagaaattgagttattgcatgacatatagcatctaatcagagact 8859586  T
Q  214 atttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaacatgatgaggaaatt 313  Q
    | |||  ||||||| |||||||||||||||||||||| ||||||| |||| |||||||| || || |||||||||||||  |||||| ||||||||| |     
T  8859585 acttaggaatttattgttttaagtagtttttagtgttatttaatcgttttcaactagtaatgtttgttatggatgttttgcggaacaggatgaggaattg 8859486  T
Q  314 tattggagatatatgcagctacaacatataaaacaagtttggcgatgtatgaagata 370  Q
     | | |||||||| | || ||||||||  |||| |||| ||| || |||||||||||    
T  8859485 cacttgagatataagaagatacaacatggaaaagaagtatggggaagtatgaagata 8859429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 114 - 370
Target Start/End: Original strand, 8875832 - 8876087
Alignment:
Q  114 atgataaccggtcattttgtaggttattatattacatttatcctccataatcgataagaaattaagtgattgaatgacctataacatctaatcagtgacc 213  Q
    ||||||||  || |||||||||||||||| ||| || |||| | |||||||  || ||||||| ||| |||| ||||| |||| ||||||||||  |||     
T  8875832 atgataactcgtaattttgtaggttattacattgcacttattccccataatatatgagaaattgagttattgcatgacttatagcatctaatcatagact 8875931  T
Q  214 atttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaacatgatgaggaaatt 313  Q
    | |||  ||||||| ||||||||||||||| |||||| ||||||| ||||||||||||| || || |||||||||||||   ||||| ||||||||| |     
T  8875932 acttaggaatttattgttttaagtagtttt-agtgttatttaatcgttttgaactagtaatgtttgttatggatgttttgcagaacaggatgaggaattg 8876030  T
Q  314 tattggagatatatgcagctacaacatataaaacaagtttggcgatgtatgaagata 370  Q
     ||| |||||||| | || ||||||||  |||| |||| ||| || |||||||||||    
T  8876031 catttgagatataagaagatacaacatggaaaagaagtatggggaagtatgaagata 8876087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 129 - 292
Target Start/End: Original strand, 8858823 - 8858986
Alignment:
Q  129 tttgtaggttattatattacatttatcctccataatcgataagaaattaagtgattgaatgacctataacatctaatcagtgaccatttattaatttatg 228  Q
    ||||||||||| || ||| || |||||| || ||||| || ||||||| ||| |||| ||||| |||| ||||||||||| ||| |||||| |||||||     
T  8858823 tttgtaggttagtacattgcacttatcccccgtaatctatgagaaattgagttattgcatgacatatagcatctaatcagagactatttatgaatttatt 8858922  T
Q  229 gttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgtttt 292  Q
    |||||||||||||||||||||| |||||||||||||||  | || || || |||||||||||||    
T  8858923 gttttaagtagtttttagtgttatttaatcattttgaatcaataatgtttgttatggatgtttt 8858986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 289
Target Start/End: Complemental strand, 2478736 - 2478577
Alignment:
Q  129 tttgtaggttattatattacatttatcctccataatcgataagaaattaagtgattgaatgacctataacatctaatcagtgaccatttattaatttatg 228  Q
    |||| ||||||| || || || |||||| |||||||  | |||||||||||||| || |||||||| ||||||||||||||||| |||||  ||||||||    
T  2478736 tttgaaggttatcatgttgcacttatcccccataatgaacaagaaattaagtgaatgcatgacctaaaacatctaatcagtgactatttaggaatttatg 2478637  T
Q  229 gttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgt 289  Q
    ||||||| |||||||||||||  ||| |||| |||||| ||||| |||||||  |||||||    
T  2478636 gttttaattagtttttagtgtagtttgatca-tttgaaatagtaatgcttatcttggatgt 2478577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 12866210 - 12866135
Alignment:
Q  223 tttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaa 298  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||||||| || ||||  ||||||||| ||||||    
T  12866210 tttatggttttaattagtttttagtgttatttgatcattttgaactagtaatgtttatgttggatgtttgatggaa 12866135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 23103149 - 23103242
Alignment:
Q  198 catctaatcagtgaccatttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttt 291  Q
    |||||||| |||| | |||||  | ||||| ||||||| ||||||||||||||  ||| |||||||||||||||| ||||| || |||||||||    
T  23103149 catctaattagtgcctatttaggattttatagttttaattagtttttagtgttaattattcattttgaactagtaatgcttgttgtggatgttt 23103242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 19856950 - 19856882
Alignment:
Q  223 tttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttt 291  Q
    ||||| ||||||||| ||||||||||||  |||||||||||||||||||  ||||| || |||||||||    
T  19856950 tttatagttttaagttgtttttagtgttaattaatcattttgaactagtgatgcttgttgtggatgttt 19856882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 16803168 - 16803245
Alignment:
Q  229 gttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaacatgatgagga 309  Q
    ||||||| |||||||||||||| |||||| |||||||||   || ||||| || ||||||||| ||| |||||||||||||    
T  16803168 gttttaattagtttttagtgttatttaataattttgaac---taatgcttgttgtggatgtttgatgaaacatgatgagga 16803245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 7228084 - 7228188
Alignment:
Q  169 aagaaattaagtgattgaatgacctataacatctaatcagtgaccatttattaattt-atggttttaagtagtttttagtgttctttaatcattttgaac 267  Q
    |||||||| |||||||||||  ||||  | |||||||||||| | |||||  | ||| || |||||||||||| |||||||||  |||||| ||||||||    
T  7228084 aagaaattgagtgattgaattgcctaagagatctaatcagtgcctatttagaatttttatagttttaagtagtgtttagtgttaattaatctttttgaac 7228183  T
Q  268 tagta 272  Q
    |||||    
T  7228184 tagta 7228188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 25992420 - 25992368
Alignment:
Q  239 gtttttagtgttctttaatcattttgaactagtattgcttattatggatgttt 291  Q
    |||||||||||| ||||||||||||||| ||||| ||||| | ||||||||||    
T  25992420 gtttttagtgttatttaatcattttgaattagtaatgcttgtcatggatgttt 25992368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 300
Target Start/End: Original strand, 983732 - 983834
Alignment:
Q  198 catctaatcagtgaccatttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatgga 297  Q
    ||||||||||||| | |||||  | ||||||||||||| ||||||| |||||  ||| |||||||| |||||||  ||||| || |  |||||| |||||    
T  983732 catctaatcagtgtctatttaggattttatggttttaattagttttaagtgtagtttgatcattttaaactagtgatgcttgttttttatgtttgatgga 983831  T
Q  298 aca 300  Q
    |||    
T  983832 aca 983834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 26573346 - 26573258
Alignment:
Q  202 taatcagtgaccatttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttt 291  Q
    ||||||||||| ||||| |  |||||| |||||| || ||||||||||  ||| ||||||||||||||||  ||||| || |||||||||    
T  26573346 taatcagtgactatttagttttttatg-ttttaattattttttagtgtagtttgatcattttgaactagttatgcttgttttggatgttt 26573258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 129 - 300
Target Start/End: Original strand, 15243817 - 15243988
Alignment:
Q  129 tttgtaggttattatattacatttatcctccataatcgataagaaattaagtgattgaatgacctataacatctaatcagtgaccatttattaatttatg 228  Q
    |||||||||||| || ||||| |||||| |||||||  | |||||||| ||||| || |||||||| ||||||||||||||||| |||||  ||||||||    
T  15243817 tttgtaggttatcatgttacacttatcccccataatgaacaagaaattgagtgaatgcatgacctaaaacatctaatcagtgactatttaggaatttatg 15243916  T
Q  229 gttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaaca 300  Q
    ||||||| || ||||||||||| ||| ||||||||||||||||| ||||| || |||||| || ||||||||    
T  15243917 gttttaattaatttttagtgttatttgatcattttgaactagtaatgcttgttttggatgattgatggaaca 15243988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 115 - 312
Target Start/End: Original strand, 19705385 - 19705581
Alignment:
Q  115 tgataaccggtcattttgtaggttattatattacatttatcctccataatcgataagaaattaagtgattgaatgacctataacatctaatcagtgacca 214  Q
    |||||||||  || |||||||||||| || || || |||||| |||||| | || ||||||| ||||  || ||| |||||||||| ||||||||||| |    
T  19705385 tgataaccgaacaatttgtaggttatcattttgcacttatcccccataacctatgagaaattgagtgtatgcatggcctataacatataatcagtgacta 19705484  T
Q  215 tttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaacatgatgaggaaat 312  Q
    ||||  | ||||||||| | ||||  |||||||||| ||||||||||||||||||||| ||||| || || | | ||| ||||||| |||||||||||    
T  19705485 tttaggagtttatggttgtgagtaacttttagtgttatttaatcattttgaactagtaatgcttgttgtgaacg-tttgtggaacaagatgaggaaat 19705581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 226 - 434
Target Start/End: Original strand, 19708234 - 19708442
Alignment:
Q  226 atggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatg-ttttatggaacatgatgaggaaatttattggagata 324  Q
    |||||||| ||||| ||||||| || | ||||||||||||||||||| ||||| || | |||| ||||||||||||  ||||||||||| | | |||||     
T  19708234 atggttttgagtagcttttagttttatataatcattttgaactagtaatgcttgttgtagatgtttttatggaacaatatgaggaaattcactagagatc 19708333  T
Q  325 tatgcagctacaacatataaaacaagtttggcgatgtatgaagatacaacgttagaatatgcaaagagttataacgcgacagatcatctaggatggtcgt 424  Q
    || |||  |||||  |   ||| |||| | ||||||| ||||||||||||||||||| |||||  ||| |||||| |  |||||| || ||||||||| |    
T  19708334 taagcatatacaatgtgggaaagaagtcttgcgatgt-tgaagatacaacgttagaagatgcatggagatataacactgcagatcgtccaggatggtcat 19708432  T
Q  425 acaatagtac 434  Q
    ||||| ||||    
T  19708433 acaattgtac 19708442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 23412573 - 23412488
Alignment:
Q  221 aatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaacatgatga 306  Q
    |||||||| |||||  || ||||||||||| ||||||||||||||||||||| || || |||| |||||||| |||||||||||||    
T  23412573 aatttatgattttatataatttttagtgttatttaatcattttgaactagtaatggttgttatagatgttttgtggaacatgatga 23412488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 19707013 - 19707086
Alignment:
Q  349 agtttggcgatgtatgaagatacaacgttagaatatgcaaagagttataacgcgacagatcatctaggatggtc 422  Q
    ||||||| |||||||||||||||||||||||||||||||| ||| |||||| | ||| ||| || |||||||||    
T  19707013 agtttggagatgtatgaagatacaacgttagaatatgcaaggagatataacactacaaatcgtccaggatggtc 19707086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 4857319 - 4857231
Alignment:
Q  130 ttgtaggttattatattacatttatcctccataatcgataagaaattaagtgattgaatgacctataacatctaatcagtgaccattta 218  Q
    |||| ||||||||  |||||||||||||| ||| || || | ||||||| |||||| ||||||||||||||||||| |||||| |||||    
T  4857319 ttgttggttattactttacatttatcctctatattctatgataaattaactgattgtatgacctataacatctaattagtgactattta 4857231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 15877312 - 15877391
Alignment:
Q  231 tttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaacatgatgaggaa 310  Q
    ||||||||||||||||||||  |||||||||||||||||||| || || || ||||||||| ||   |||||||||||||    
T  15877312 tttaagtagtttttagtgttaattaatcattttgaactagtaatgattgttgtggatgtttgattatacatgatgaggaa 15877391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 1971643 - 1971729
Alignment:
Q  214 atttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaaca 300  Q
    |||||| ||||||||| |||||| |||||||||||||  ||| |||||||||||| ||| ||||  || |||||||||| |||||||    
T  1971643 atttatgaatttatgggtttaagcagtttttagtgttagttagtcattttgaacttgtaatgctcgttgtggatgttttgtggaaca 1971729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 26780977 - 26780917
Alignment:
Q  231 tttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttt 291  Q
    ||||||| ||||||||||||  |||||||||||||||||||| ||||| |  |||||||||    
T  26780977 tttaagttgtttttagtgttaattaatcattttgaactagtaatgcttgtcctggatgttt 26780917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 310
Target Start/End: Original strand, 33078338 - 33078449
Alignment:
Q  199 atctaatcagtgaccatttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaa 298  Q
    |||||||||||||| |||||  | ||||  ||||||| ||||||||||||||  ||| ||||||||||||| |  ||||| || || |||||| |||  |    
T  33078338 atctaatcagtgactatttaggattttagagttttaattagtttttagtgttaattactcattttgaactaatgatgcttgttttgaatgtttgatgata 33078437  T
Q  299 catgatgaggaa 310  Q
    || |||||||||    
T  33078438 caagatgaggaa 33078449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 47900827 - 47900733
Alignment:
Q  178 agtgattgaatgacctataacatctaatcagtgaccatttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagta 272  Q
    ||||| || |||| ||| ||||||||||||  ||| |||||  ||||||| ||||||| |||||||||||||  ||| |||||||| || |||||    
T  47900827 agtgaatgcatgaactaaaacatctaatcaccgactatttaggaatttattgttttaattagtttttagtgtagtttgatcattttaaattagta 47900733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 115 - 265
Target Start/End: Original strand, 7634596 - 7634746
Alignment:
Q  115 tgataaccggtcattttgtaggttattatattacatttatcctccataatcgataagaaattaagtgattgaatgacctataacatctaatcagtgacca 214  Q
    ||||||||||  |||||||||||||||| | |||| |||||| |||||||| |||||||||| |||||||| ||| |||| | | |||||| |||||  |    
T  7634596 tgataaccggcaattttgtaggttattacactacacttatcccccataatctataagaaattgagtgattgcatggcctaaaccttctaattagtgatta 7634695  T
Q  215 tttattaatttatggttttaagtagtttttagtgttctttaatcattttga 265  Q
    ||||  ||||||||||||||||||||||||||| || ||||||||||||||    
T  7634696 tttaggaatttatggttttaagtagtttttagtattatttaatcattttga 7634746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 29452866 - 29452986
Alignment:
Q  127 attttgtaggttattatattacatttatcctccataatcgataagaaattaagtgattgaatgacctataacatctaatcagtgaccatttattaattta 226  Q
    |||||||||||||||||||| ||||||||| ||| |||  || ||||||| ||| |||| |||  |||| |||| |||| |||||| |||||  ||||||    
T  29452866 attttgtaggttattatattgcatttatcccccaaaatttattagaaattgagtaattgcatggtctatgacatataattagtgactatttaaaaattta 29452965  T
Q  227 tggttttaagtagtttttagt 247  Q
    || |||||| |||||||||||    
T  29452966 tgattttaattagtttttagt 29452986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 302
Target Start/End: Complemental strand, 30123021 - 30122889
Alignment:
Q  170 agaaattaagtgattgaatgacctataacatctaatcagtgaccatttattaatttatggttttaagtagtttttagtgttctttaatcattttgaacta 269  Q
    ||||||||||| | || ||| |||| |||||||||| ||||   |||||  | ||||| ||||||| |||||||||||||| | |  |||||||||||||    
T  30123021 agaaattaagtaaatgtatggcctaaaacatctaattagtgcatatttaggattttatagttttaattagtttttagtgttatgtggtcattttgaacta 30122922  T
Q  270 gtattgcttattatggatgttttatggaacatg 302  Q
    ||| |  || || ||||||||| ||||||||||    
T  30122921 gtaatttttgttttggatgtttgatggaacatg 30122889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 130 - 298
Target Start/End: Complemental strand, 15608425 - 15608257
Alignment:
Q  130 ttgtaggttattatattacatttatcctccataatcgataagaaattaagtgattgaatgacctataacatctaatcagtgaccatttattaatttatgg 229  Q
    ||||||||||||||||| || |||||||| |||||| || ||||||| |||||||| ||||| | || |||||||| | |||| |||||  ||||||||     
T  15608425 ttgtaggttattatattgcacttatcctctataatctatgagaaattgagtgattgcatgacatgtagcatctaataattgactatttaggaatttatga 15608326  T
Q  230 ttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaa 298  Q
    |||||| ||| |||||||||| ||||||| ||||||| ||||| ||||  || | | ||||||||||||    
T  15608325 ttttaaatagcttttagtgttatttaatctttttgaagtagtaatgctcgtttttgttgttttatggaa 15608257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 131 - 299
Target Start/End: Original strand, 17468371 - 17468538
Alignment:
Q  131 tgtaggttattatattacatttatcctccataatcgataagaaattaagtgattgaatgacctataacatctaatcagtgaccatttattaatttatggt 230  Q
    ||||| |||| || ||||| |||||| |||||||  |||||||||| ||||| ||  || | || | ||||||||||||||| |||||  ||||||  ||    
T  17468371 tgtagtttatcatgttacacttatcccccataatgaataagaaattgagtgaatgcgtggcataaagcatctaatcagtgactatttaggaatttacagt 17468470  T
Q  231 tttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaac 299  Q
    ||||| || ||||||||||  ||||||||||||||||||| | ||||| || ||||||||| |||||||    
T  17468471 tttaatta-tttttagtgtagtttaatcattttgaactagcaatgcttgttttggatgtttaatggaac 17468538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 27892864 - 27892955
Alignment:
Q  199 atctaatcagtgaccatttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttt 291  Q
    ||||||| |||| | ||||| || ||||| | ||||||| |||||||||||| || |||||||||||||||||| ||||| || || ||||||    
T  27892864 atctaataagtgtctatttagtattttatagatttaagttgtttttagtgttatt-aatcattttgaactagtaatgcttgttgtgtatgttt 27892955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 43582633 - 43582570
Alignment:
Q  245 agtgttctttaatcattttgaactagtattgcttattatggatgttttatggaacatgatgagg 308  Q
    |||||| ||||||||||||||||||||| ||| | || |||||| || ||| ||||||||||||    
T  43582633 agtgttatttaatcattttgaactagtaatgcgtgttgtggatgcttgatgaaacatgatgagg 43582570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 170 - 310
Target Start/End: Complemental strand, 17558942 - 17558802
Alignment:
Q  170 agaaattaagtgattgaatgacctataacatctaatcagtgaccatttattaatttatggttttaagtagtttttagtgttctttaatcattttgaacta 269  Q
    ||||||| ||| | || ||| |||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||  ||||||||||| |||||    
T  17558942 agaaattgagttaatgcatggcctaaaacatctaatcagtgactatttatgaatttatggttttaagtagtttttagtgttaattaatcattttaaacta 17558843  T
Q  270 gtattgcttattatggatgttttatggaacatgatgaggaa 310  Q
    ||| ||| | || || |||||| | |||||| | |||||||    
T  17558842 gtaatgcatgttttgaatgtttgaaggaacaaggtgaggaa 17558802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 27467906 - 27467827
Alignment:
Q  221 aatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaaca 300  Q
    ||||||||||||||| | | |||||||||  ||| |||| ||||||||| || ||||| || ||||||||| ||||||||    
T  27467906 aatttatggttttaattggcttttagtgtagtttgatcactttgaactaataatgcttgttttggatgtttgatggaaca 27467827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 7355468 - 7355366
Alignment:
Q  198 catctaatcagtgaccatttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatgga 297  Q
    ||||||||||||||| |||||| ||||||||||||||| || ||||||||||| ||| |||||||||||||| || |||||| | ||||||||| |||||    
T  7355468 catctaatcagtgactatttataaatttatggttttaattaatttttagtgttatttgatcattttgaactaataatgcttagtttggatgtttgatgga 7355369  T
Q  298 aca 300  Q
    |||    
T  7355368 aca 7355366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 188 - 302
Target Start/End: Original strand, 10178877 - 10178991
Alignment:
Q  188 tgacctataacatctaatcagtgaccatttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggat 287  Q
    ||||||| | ||| ||||||||| |||||||  | ||||| ||||||| || ||||||||||| ||||||||||||||||||||| | ||| || |||||    
T  10178877 tgacctaaatcatttaatcagtgtccatttaggattttatagttttaattaatttttagtgttatttaatcattttgaactagtaatacttgttttggat 10178976  T
Q  288 gttttatggaacatg 302  Q
    |||| ||||||||||    
T  10178977 gtttgatggaacatg 10178991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 37239486 - 37239435
Alignment:
Q  221 aatttatggttttaagtagtttttagtgttctttaatcattttgaactagta 272  Q
    ||||||||||||||| || |||||| |||| |||||||||||||||||||||    
T  37239486 aatttatggttttaactaatttttaatgttatttaatcattttgaactagta 37239435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 51461088 - 51461149
Alignment:
Q  230 ttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttt 291  Q
    |||||||| ||||||||||||  ||||||||||||||||| || ||||| || |||||||||    
T  51461088 ttttaagttgtttttagtgttaattaatcattttgaactattaatgcttgttgtggatgttt 51461149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 19943583 - 19943500
Alignment:
Q  187 atgacctataacatctaatcagtgaccatttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactag 270  Q
    |||||||| ||||| ||||||||| | |||||  | ||||  ||||| | ||||||||| |||| |||||||||||||||||||    
T  19943583 atgacctaaaacatataatcagtgtctatttaggattttagagttttgattagtttttattgttatttaatcattttgaactag 19943500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 22271187 - 22271136
Alignment:
Q  240 tttttagtgttctttaatcattttgaactagtattgcttattatggatgttt 291  Q
    ||||||||||| |||||||||||||||||| || || || ||||||||||||    
T  22271187 tttttagtgttatttaatcattttgaactaataatgtttgttatggatgttt 22271136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 107643 - 107726
Alignment:
Q  223 tttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaacatgatga 306  Q
    ||||| ||||||| ||||||||||||||  ||||||| |||||||||||| ||||| || |||| |||| |||  |||||||||    
T  107643 tttatagttttaattagtttttagtgttaattaatcaatttgaactagtaatgcttgttgtggaagtttgatgatacatgatga 107726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 270
Target Start/End: Complemental strand, 48559475 - 48559383
Alignment:
Q  178 agtgattgaatgacctataacatctaatcagtgaccatttattaatttatggttttaagtagtttttagtgttctttaatcattttgaactag 270  Q
    ||||| || |||||||| |||||||||| |||| | |||||  | ||||  ||||||| |||||||||| ||  |||||||||||||||||||    
T  48559475 agtgaatgtatgacctaaaacatctaattagtgcctatttaagattttagagttttaattagtttttagagtagtttaatcattttgaactag 48559383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 4288279 - 4288228
Alignment:
Q  239 gtttttagtgttctttaatcattttgaactagtattgcttattatggatgtt 290  Q
    ||||||||||||  |||||||||||||||||||| || || |||||||||||    
T  4288279 gtttttagtgttaattaatcattttgaactagtaatgtttgttatggatgtt 4288228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 14274251 - 14274306
Alignment:
Q  223 tttatggttttaagtagtttttagtgttctttaatcattttgaactagtattgctt 278  Q
    |||||| |||||| |||||||||||||  |||||||||||||||||| || |||||    
T  14274251 tttatgattttaattagtttttagtgtagtttaatcattttgaactaataatgctt 14274306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 119124 - 119193
Alignment:
Q  237 tagtttttagtgttctttaatcattttgaactagtattgcttattatggatgttttatggaacatgatga 306  Q
    |||||||||  ||| |||| |||||||||||||||| | ||  || ||| ||||||||||||||||||||    
T  119124 tagtttttatagttatttagtcattttgaactagtaattctcgttttggttgttttatggaacatgatga 119193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University